Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0399 ATGGATGTTCAAGTGATAAATGTGGAAGTAAGTGGTCATCAAACTAAGGCAGATGATGGCGATGCAGAACCAAGTGACGGTGAAGTTAATAATGCTGAAAACTATGGATCTCATGTTGAGGATGAGATTTCTGAGCCACACGTGGGTATGGAATTTGGCTCTGAAGATGTTGCTAAGAATTTTTATAATGAATATGCTAGACACATGGGTTTTAGCTCTAAGGTTGGCCCATATGGTCGCTCTAAAGCTGATGGCGAAAATATGTATAGGGAGTTTGTGTGTGGTGGGGAAGGTTTGAAAAAAAGCCCAAATGAAAGTTGCAATGCAATGATTAGGATTGAGCTAAAGGGTCAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTACATGGTGAGTTCCAGTAAGGCACACAGTCGTCGGCCAAGTAAGCATTTTTCCAGTGTTGGAAGGACAATGCCTGAAACATATCAAGGAGTGGGTCTTGTTCCCAGTGGTGTCATGTATGTATCTATGGATGGGAATCGTGTTTCAAATCAGAATACTCGTGGGGTGAAGAATATTCATACTGCTGCTGCTGAACGCAGTCACTTAGTTAAAAATTCCACATTGATGAATTATTCTGTTAGGCCTTGTTCTCAAAACAAGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTATTTTAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCGATACAACTTGATGAAGAGAATCGTATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGAGACACAGTTCATCTGGACACAACATACAAGGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCACTCATTTTGGATGATTCTGAGGCATCTTTTCTGTGGCTCTTGAAGACATTTCTCACAGCAATGAATGATCGCCAGCCTATCTCTATAACTACTGATCAAGACAGAGCCATGCAGACAGCAGTTTCTCAAGTTTTCCCACAAGCTCGCCATTGTATTAGCAAGTGGCAAATCTTGAGAGAAGGCCAAGAAAAGTTGGCCCATGTCTGTCTTGCACATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACTTGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTTTATCCTCAATAAATATGAACTCAGGGGAAATGATTGGCTTCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCGGCATACTTTCGTGATTCATTTTTTGCAGCAATATCTCCTACTCAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACGACGTTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATCGAAAAGGAAATAGAAGCTGATTTTGAGACAGTTAGCACAACACCAGTTTTGAAGACGCCTTCGCCAATGGAGAAACAGGCTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGATGAGCTTGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGGCCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAAAAGGCATACATGGTTACATTAAACCATTCTGAGTTGAAAGCTAACTGTAGTTGCCAAATGTTTGAGTATGCAGGCATTCTTTGCAAGCATATTTTAACAGTTTTCACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTAAAACGGTGGACACGGAATGCCAAAAACAGTGCTGGATTGGATGAACATACTGGTGAATCACATGCACAGGAGTCTTTGACAGCAAGGTATGGCAATCTTTGTAAGGAAGCCATCAGATATGCTGAGGAAGGGTCAGTAACTGTGGAAACTTATAATGCTGCAATAAGTGGTCTTAGAGAAGGTGTAAAAAAGGTTGCTAATGTGAAAAAAAGTGTTGCCAAAGTTACGCCTCCTAATAATCAGGCCAGTGGGACTGCATATGATGACAGGAAAACTACTCCAACTTTGGATACAACTCCTCTTTTATGGCCTTGGCAAGATGAAATAACAAGAAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGAGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAGGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTGAAGTTGCAAGATTATAGCAGGGCTCCATCTGCAGAATCTGAGGTTAAGTTTCATCTCTCCAGAGTTACTTTAGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTGTCAACACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTCAAGATACCGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTGCGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTGATGATGCACAATCAGAACCTCTGTCGAAAAAACACAGGAAGTAA 2643 0.4045 MDVQVINVEVSGHQTKADDGDAEPSDGEVNNAENYGSHVEDEISEPHVGMEFGSEDVAKNFYNEYARHMGFSSKVGPYGRSKADGENMYREFVCGGEGLKKSPNESCNAMIRIELKGQNKWVVTKFVKEHSHYMVSSSKAHSRRPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGVKNIHTAAAERSHLVKNSTLMNYSVRPCSQNKTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEENRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALILDDSEASFLWLLKTFLTAMNDRQPISITTDQDRAMQTAVSQVFPQARHCISKWQILREGQEKLAHVCLAHPNFQVELYNCINLTETIEEFESSWNFILNKYELRGNDWLQSLYNARAQWVPAYFRDSFFAAISPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVSTTPVLKTPSPMEKQAANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYMVTLNHSELKANCSCQMFEYAGILCKHILTVFTVTNVLTLPPHYILKRWTRNAKNSAGLDEHTGESHAQESLTARYGNLCKEAIRYAEEGSVTVETYNAAISGLREGVKKVANVKKSVAKVTPPNNQASGTAYDDRKTTPTLDTTPLLWPWQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENRNSTPGNKVAVINLKLQDYSRAPSAESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQSEPLSKKHRK* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0399 880 Pfam MULE transposase domain 275 366 IPR018289 -
Gso20g0399 880 MobiDBLite consensus disorder prediction 10 31 - -
Gso20g0399 880 SMART 26again6 564 591 IPR006564 GO:0008270
Gso20g0399 880 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 808 IPR031052 GO:0006355
Gso20g0399 880 Pfam FAR1 DNA-binding domain 60 135 IPR004330 -
Gso20g0399 880 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 34 808 - -
Gso20g0399 880 Pfam SWIM zinc finger 559 587 IPR007527 GO:0008270
Gso20g0399 880 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0399 Gso-Chr20 12173721 12191490 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso20g0399 MULE 5.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0399 - - gmx:100786516 1759.58