Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0389 ATGAATCAACGGTCCCCAACGCATGGAACCGAACCGCAGAGAATAATCGCGTTGTTGACTCACAAGAGAGAGAGAGAGACGATGACAAAAGAGGCTATGAATTCATTTGAGCCAGATGGAAATGGGAAGGAGTCACTGCCACCACCACCTCCTGTTGTTCCCTCTGATATTGTACCTCTCAAAGCAGAGGAGGTGCTCTGTACCCCTACCGAGCATATTAAGAAAAAGGCTTCCCGACTTCCAATAGCCAGATCTGGTCTGGGATCAAAAGGAAATAAAATACAATTACTAACCAATCACTTCAAAGTTAATGTTGCTAAAAATGATGGGCATTTCTTCCATTATAGTGTGGCTTTTACTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATAATAGATAGGGTGCAGGAGACATATCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTCTGTTTACTGTTGGCTCTCTTCCTCAAAACAAGCTTGAGTTTGAAGTTGTTCTTGAGGATGTCACCTCTAACAGGAATAATGGCAATTGCAGCCCTGATGGTCTAGGGGACAATGAGAGTGACAGAAAGAGGATGCGGCGTCCTTATCGTTCGAAGTCATTCAAAGTAGAGATAAGCTTTGCTGCAAAAATTCCAATGCAGGCCATTGCCAGTGCCTTACGCGGGCAAGAGACTGAGAATTTTCAAGAAGCCATCAGAGTTCTTGATATCATTTTGAGGCAGCATGCTGCTAAGCAAGGCTGCTTACTTGTACGCCAATCCTTTTTCCACAATAATCCAAATAATTTTGCTGATGTAGGAGGTGGTGTCCTAGGCTGTAGAGGATTCCACTCAAGCTTTAGAACTACACAGAGTGGCCTGTCTCTTAACATAGATGTGTCAACTACAATGATAATTTCTCCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAACTTGACTGGGCTAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAACTAGCCCATCCAATCAAGAATTCAAAATTTCTGGGCTCAGTGAACTCCCATGCAGAGAGCAGACTTTTACTTTGAAAGGTAAAGGTGGGGGGGATGGTGAAGATGGTAATGAGGAAATCACTGTATATGATTATTTTGTTAAGGTTCGTAAGATAGATCTCCGATACTCTGCTGACCTTCCATGTATCAATGTTGGCAAGCCTAAACGACCAACATTTTTCCCCATTGAGGTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTCTGTCCACGCTTCAAAGGGCTTCATTAGTGGAGAAGTCGAGGCAGAAGCCACAAGAGAGGATGAAAATTTTGTCTGATGCACTGAGAACAAGCAACTATGGTGCTGAACCTATGCTCCGGAATTGTGGAATTTCTATAAGCACTGGCTTCACTGAAGTGGAGGGCCGGGTGTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGATCTCAATCCTAGGAATGGGAGATGGAATGTCAGCAGAGTGAAATTTGTGGAACCATCAAAGATAGAAAGATGGGCTGTTGCTAACTTTTCTGCACGCTGTGATGTACGAGGACTTGTACGGGACCTCATTAGAATTGGAGATATGAAAGGAATTACTATAGAACAACCATTTGACGTGTTTGATGAGAATCCACAGTTTAGGCGTGCCCCCCCTATGGTTAGAGTGGAGAAAATGTTCGAGCATATCCAATCTAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATAAATCAGTGTATGTGTCCTTTAAGGGTCAATGACCAGTACCTGACTAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCATTGTTAGGCGTTGAACATTCTCCTTCTCTTCCTGTTGTTTCCAAAGCTCCCACCCTCATTCTGGGAATGGACGTGTCACATGGCTCACCTGGGCAGACTGACATTCCTTCAATTGCTGCGGTGGTCAGCTCTAGACACTGGCCTCTGATATCAAAGTATAGGGCATGTGTTCGTACGCAATCTGCAAAGATGGAAATGATTGATAATTTGTTCAAGCTAGTATCTGAAAAGGAAGATGAAGGCATCATAAGGGAACTTTTGCTTGATTTCTATACAACTTCTGGGAGGAGAAAACCGGAAAATATAATCATATTCAGGGATGGGGTTAGTGAGTCACAATTCAATCAAGTTTTGAATATTGAACTCGATCGAATCATTGAGGCTTGCAAATTTCTCGATGAAAATTGGGAGCCAAAATTTGTGGTAATTGTTGCTCAGAAGAACCACCACACTAGATTTTTCCAGCCTGGCTCTCCCGACAATGTCCCACCTGGAACTGTTATCGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGAACTAGTAGGCCTACCCATTATCATGTGCTGCTTGATCAGGTTGGTTTCTCTCCGGATCAGCTGCAGGAGCTTGTCCATTCATTATCATATGTGTATCAGAGGAGCACTACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCGCACTTGGCTGCTACTCAGTTGGGGCAGTTCATGAAATTTGAGGACAAATCTGAAACATCTTCAAGCCATGGTGGATTGAGCGGTGCAGGTGCTGTTCCCGTCCCTCAGTTGCCTCCCTTGCAGGAGAATGTCCGCAACACAATGTTCTTTTGTTGA 2844 0.4314 MNQRSPTHGTEPQRIIALLTHKRERETMTKEAMNSFEPDGNGKESLPPPPPVVPSDIVPLKAEEVLCTPTEHIKKKASRLPIARSGLGSKGNKIQLLTNHFKVNVAKNDGHFFHYSVAFTYEDGRPVEGKGVGRKIIDRVQETYHSDLNGKDFAYDGEKSLFTVGSLPQNKLEFEVVLEDVTSNRNNGNCSPDGLGDNESDRKRMRRPYRSKSFKVEISFAAKIPMQAIASALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNNPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIISPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTSPSNQEFKISGLSELPCREQTFTLKGKGGGDGEDGNEEITVYDYFVKVRKIDLRYSADLPCINVGKPKRPTFFPIEVCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALRTSNYGAEPMLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSRVKFVEPSKIERWAVANFSARCDVRGLVRDLIRIGDMKGITIEQPFDVFDENPQFRRAPPMVRVEKMFEHIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPLRVNDQYLTNVMLKINAKLGGLNSLLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRHWPLISKYRACVRTQSAKMEMIDNLFKLVSEKEDEGIIRELLLDFYTTSGRRKPENIIIFRDGVSESQFNQVLNIELDRIIEACKFLDENWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDQVGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSGAGAVPVPQLPPLQENVRNTMFFC* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0389 947 Gene3D - 667 947 IPR036397 GO:0003676
Gso20g0389 947 MobiDBLite consensus disorder prediction 21 50 - -
Gso20g0389 947 ProSiteProfiles PAZ domain profile. 339 431 IPR003100 GO:0005515
Gso20g0389 947 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Gso20g0389 947 SUPERFAMILY Ribonuclease H-like 584 906 IPR012337 -
Gso20g0389 947 Pfam PAZ domain 318 447 IPR003100 GO:0005515
Gso20g0389 947 Pfam Piwi domain 601 908 IPR003165 GO:0003676
Gso20g0389 947 Pfam N-terminal domain of argonaute 93 252 IPR032474 -
Gso20g0389 947 Pfam Mid domain of argonaute 510 563 IPR032473 -
Gso20g0389 947 Pfam Argonaute linker 1 domain 264 312 IPR014811 -
Gso20g0389 947 Gene3D paz domain 308 435 - -
Gso20g0389 947 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 23 946 - -
Gso20g0389 947 ProSiteProfiles Piwi domain profile. 600 908 IPR003165 GO:0003676
Gso20g0389 947 SMART Piwi_a_2 600 908 IPR003165 GO:0003676
Gso20g0389 947 CDD PAZ_argonaute_like 314 430 - -
Gso20g0389 947 SMART DUF1785_2 262 314 IPR014811 -
Gso20g0389 947 MobiDBLite consensus disorder prediction 185 207 - -
Gso20g0389 947 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 23 946 - -
Gso20g0389 947 SUPERFAMILY PAZ domain 309 471 IPR036085 GO:0005515
Gso20g0389 947 Gene3D - 495 661 - -
Gso20g0389 947 CDD Piwi_ago-like 475 902 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0389 Gso-Chr20 11778387 11787157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0389 84 947 Eukaryotic Initiation Factors Gene Family AT5G43810 35.437 1.72e-167 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0389 K11593 - gmx:100820376 1825.06