Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0388 ATGGGTGTAGAGAGGGGATATGATTATTGTCCAGCCAAAAAGGGTCCCTCAGTGATGAAAACCAAAAAACCTTGTTCCAAGGGCAACAAGAAGGACTGCCACATCAAGGTGAACGGGAGAGACCGTCGAGTTCGTGTATCAACAATATGTGCCGCTCGTATCTTCCAACTCACCTGTGAGCTAGGCAACAAGACAAATGGTGAGACCATTGAGTGGCTCTTACGCCAGGCCGAGCCGTCAATTATTGCCGCCACTGGCACGGGCATTATGCCTTCCAACACCACAGTGACCAACAACACCTCCTCGATTATATCGGCCACTTGTGCCAACTTTTTGCCTTCTAACAACACCACCTTGGTGCCACCAAACACAATTGTTACTCAAGATTCCAATTTGGTCACCAATGTTGCGAGTGCAAGGATAGAGCAACAAATCCCACCTTTCGATTTCGACTTTGATTGGTTGCAACACTCTGATTTAGGGTTTTGA 489 0.4744 MGVERGYDYCPAKKGPSVMKTKKPCSKGNKKDCHIKVNGRDRRVRVSTICAARIFQLTCELGNKTNGETIEWLLRQAEPSIIAATGTGIMPSNTTVTNNTSSIISATCANFLPSNNTTLVPPNTIVTQDSNLVTNVASARIEQQIPPFDFDFDWLQHSDLGF* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0388 162 ProSiteProfiles TCP domain profile. 30 84 IPR017887 -
Gso20g0388 162 Pfam TCP family transcription factor 30 104 IPR017887 -
Gso20g0388 162 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 15 156 - -
Gso20g0388 162 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 156 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0388 Gso-Chr20 11751330 11751818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0388 18 98 TCP Transcription Factor Family AT3G47620 60.494 2.10e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso20g0388 TCP 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0388 - K16221 pvu:PHAVU_005G132500g 193.741