Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0374 ATGGCTAGGAAGAAGGTGGACCTTTCATACATAACCAACGCCCGGAAGAGGAAGGCTACATTAAGCAAAAGGAAGAATGGTTTGATCAAGAAGATGGATGAAATCAGCACTCTTTGTGGGATTGAAGCATGTGCTATATTTTATACTCCCAATAATCCCCAGCCAGAGGTTTGGCCATCTGATTCGGGAGCCCAAAGTGTGCTTTCTAGGTTTAGGAAAGTGTCTGAACTAGAACAAAGCAAAAAAAAGTTGAGTCAAGAGAGTTTTTTGAGGCAGAGGATTAACAAAGCCCAAGTACAACTTGGGAAACTAAGGAATGAAAATAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAAAACCTTAATGCTAAGAACAATTTTGAAAATTCAAATATGATTGATTTGAATGATGTCTCAAACTTGATTAATCATAACTTGGAGGAAGTAAAAAGGAAAATCAATATGAGCCAAGCCCAAGAGGTGAAACCAATTGTTGACAACGAAGGAGAAACCATGAGTCAAGGAGGGAAATCACTTGTGAATCATGTCCAAGGGACAGAGACTAATGTGGATGCCATGTAG 582 0.3952 MARKKVDLSYITNARKRKATLSKRKNGLIKKMDEISTLCGIEACAIFYTPNNPQPEVWPSDSGAQSVLSRFRKVSELEQSKKKLSQESFLRQRINKAQVQLGKLRNENRKKEVTLLMFQNLNAKNNFENSNMIDLNDVSNLINHNLEEVKRKINMSQAQEVKPIVDNEGETMSQGGKSLVNHVQGTETNVDAM* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0374 193 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso20g0374 193 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Gso20g0374 193 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gso20g0374 193 MobiDBLite consensus disorder prediction 168 193 - -
Gso20g0374 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gso20g0374 193 MobiDBLite consensus disorder prediction 171 193 - -
Gso20g0374 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso20g0374 193 Coils Coil 87 114 - -
Gso20g0374 193 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 171 - -
Gso20g0374 193 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gso20g0374 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso20g0374 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso20g0374 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0374 Gso-Chr20 10409737 10410465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0374 1 155 Type I MADS-box Gene Family AT5G48670 50.323 2.84e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso20g0374 SRF-TF 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0374 - - gmx:102664096 379.793