Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso20g0370 | ATGGCGCATAGGTTGCTGAGAGACCACGAAGCAGACGGTTGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGTCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCTAGATATAAGAAAACCGAGATCTGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCTGTTCAAGTTCGAGACACGGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAACAGGGAGTATTTTGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTACTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACCCTGGAGGCTCCTGAGGATGAGAGCATTAAAACGCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATTAAGGGCCTTAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTCTGATGGTTCTGATCAAGCTAGGCCGCAGGCATCTGTAGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAAAACCAGGACCAAGCCCAAGGAATGCTTTACTATAACAATCCCCCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTTCATCCCAAGATGGTCCTCCCGGTGGGCCTTCTGGGTTGGGGGAGAACAAGCCCGGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCAACCTGGCCAATACCATCAGTATTATCCACCATATGGTTATATGCCACCACCTCCCCCTTATCATCAGTACCCCCCACCTCCATACAATGCTGCAGTGGCTCCGTCCCAGCCACCAGCCGCAAATCATCCTTATCAGCATTCTATGCAGCCAGGTTCTTCACAGCCAGGATCTTCCCAGGCTGCATCTGCGCCAGCTGAAACTGGAACATCAACATCAGGGTCATAG | 1446 | 0.4751 | MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARPQASVAHSGLLPRAVISQQQNQDQAQGMLYYNNPPPPQQERSYYPSMDPQRMGALVSSQDGPPGGPSGLGENKPGLEKQQMQHYAHPMMPPQPGQYHQYYPPYGYMPPPPPYHQYPPPPYNAAVAPSQPPAANHPYQHSMQPGSSQPGSSQAASAPAETGTSTSGS* | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso20g0370 | 481 | SUPERFAMILY | CCCH zinc finger | 159 | 182 | IPR036855 | GO:0046872 | |
| Gso20g0370 | 481 | Gene3D | - | 212 | 310 | IPR012677 | - | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 447 | 481 | - | - | |
| Gso20g0370 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 288 | IPR000504 | GO:0003723 | |
| Gso20g0370 | 481 | Pfam | Torus domain | 146 | 194 | IPR032297 | - | |
| Gso20g0370 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 157 | 184 | IPR000571 | GO:0046872 | |
| Gso20g0370 | 481 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE | 1 | 460 | - | - | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 342 | 390 | - | - | |
| Gso20g0370 | 481 | SMART | rrm1_1 | 229 | 297 | IPR000504 | GO:0003723 | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 420 | 440 | - | - | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 304 | 318 | - | - | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 299 | 320 | - | - | |
| Gso20g0370 | 481 | Gene3D | - | 148 | 209 | - | - | |
| Gso20g0370 | 481 | MobiDBLite | consensus disorder prediction | 420 | 481 | - | - | |
| Gso20g0370 | 481 | CDD | RRM_RBM22 | 227 | 300 | - | - | |
| Gso20g0370 | 481 | PANTHER | PRE-MRNA-SPLICING FACTOR RBM22 | 1 | 460 | IPR039171 | GO:0003723 | |
| Gso20g0370 | 481 | SUPERFAMILY | RNA-binding domain, RBD | 221 | 309 | IPR035979 | GO:0003676 | |
| Gso20g0370 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 301 | IPR000504 | GO:0003723 | |
| Gso20g0370 | 481 | SMART | c3hfinal6 | 157 | 183 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso20g0370 | Gso-Chr20 | 10188160 | 10192775 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso20g0370 | 215 | 289 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 35.000 | 2.52e-07 | 51.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso20g0370 | K12872 | - | gmx:100779917 | 891.723 |