Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0356 ATGAAGCAGCAGCCATCGCTTCTTCTGGGTTCTTGCAAAGCTGAGTTAGAATCACCATCTGCAGCGAAAAGCCCTTCACGAACGGTATGTGAGTGCAATATTTGCGGCAAGGTTTTCAGCAGCGGTAAGGCTTTGGGGGGTCACAGAAGATCGCACTTTCAGAAGCACCAGAAGAAGATAAAAGTCCGTTTCACTAATCACTCATCAAAACAAGCTGGTGATACCAGCAACAATATTAAGAGGGCTAGGAATTGTGATTATGATACTGTTGATGATGGAAAACGCGTTTGTTGCATTTGCAAGAAGGAATTCCCCACAAAGAATGCTTTGTTTGGTCACATGCGATCTCACCCTGAGAGGTCATGGAGGGGTGTGTCTCCTCCCACTCATTTTCCCAATAAGAACTCTTCGTCTTCTTCTTCTCTCTCTTCTTCTTTCTCTTTTTCTTCCCATAATTCTGATTCTATGGAGAAAAACATGGAAGAGGATCGTGATGATTATGATGAATGTGTTGGTGTTGGAGCTGTTTGTGATGGTGGGGGTAATAGGGCTATTGATCTTTCAACTTTTACTTGCCCCAGTTGGCTTAAGACTGATGTGAGAGGAAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTTGCTTACTTAAGTGTTTACTCTAAGTACTTTTGTGGTGAGTCTAATGGGGTTTCTCCGAAGAAAGATGAAGTGCGGCCGAAGAGTGCTCCACCTCTAATCAAGCTTGGCAAAAGGAAGATTAATTTTAGTGGATCGTCTTCAAGTAAGAAGCATGAGGTGAAAAAGATAAAATTTTATCTGAAGGGTGAATTGAAAATCGGAAAGAGAAATGACGCGGATGGTGAAGATGATGATGATGAGGATGAGAAGTTGAATAGGTGCAAGGGTTTATCTGAATCTGAGGTGGAAGATGAGGAGGGTTTCGACAATGTGATCACTGAGGTGGTTGCTCCCGATAGGATGCAAGATGACGTTGATGAAAGGAAGGGGAAGAGGGTGGTGGATCATAAAGGGAAGAACATTAAGAAACTGGTGCTGAAATCTATGGCAAAAGAGAAAGAGAATGAGAAAGTTGGTGGCTACAAATGTGGTGTTTGTGGGAAGATTTTCTCAACTTTTCAAGGCTTAGGAAGACACATATCAGTCCACAAGGGGAAGAACAACAACGCTGTAATAATCATGGACGAGTCCAACCACAGCCATTCCAAAGCTCTTGGTGATAAAGAAAACAACTCTTCTAGCTCTAGTAACACGCACAAGGTAGACGAGGCTTCAATGAATGAAGCACCATTGCCTACTACAATGAATGATGCACCATTGCCAGCAGATGAGAGAAAAGTGAATGACGAAACATCCGAAACGCCACCATTACTACCATTGCCGGCACACGAGGCATGTCAATCTTCTTCAGGTGTTAAGAAATTGGACTTTGATCTGAATGAATTGCCTTGTGCTATGGAGGATTAA 1491 0.4299 MKQQPSLLLGSCKAELESPSAAKSPSRTVCECNICGKVFSSGKALGGHRRSHFQKHQKKIKVRFTNHSSKQAGDTSNNIKRARNCDYDTVDDGKRVCCICKKEFPTKNALFGHMRSHPERSWRGVSPPTHFPNKNSSSSSSLSSSFSFSSHNSDSMEKNMEEDRDDYDECVGVGAVCDGGGNRAIDLSTFTCPSWLKTDVRGRKCIGAYEAAETLAYLSVYSKYFCGESNGVSPKKDEVRPKSAPPLIKLGKRKINFSGSSSSKKHEVKKIKFYLKGELKIGKRNDADGEDDDDEDEKLNRCKGLSESEVEDEEGFDNVITEVVAPDRMQDDVDERKGKRVVDHKGKNIKKLVLKSMAKEKENEKVGGYKCGVCGKIFSTFQGLGRHISVHKGKNNNAVIIMDESNHSHSKALGDKENNSSSSSNTHKVDEASMNEAPLPTTMNDAPLPADERKVNDETSETPPLLPLPAHEACQSSSGVKKLDFDLNELPCAMED* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0356 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Gso20g0356 496 ProSitePatterns Zinc finger C2H2 type domain signature. 30 52 IPR013087 -
Gso20g0356 496 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 1 496 - -
Gso20g0356 496 MobiDBLite consensus disorder prediction 128 154 - -
Gso20g0356 496 ProSitePatterns Zinc finger C2H2 type domain signature. 371 391 IPR013087 -
Gso20g0356 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Gso20g0356 496 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso20g0356 496 SUPERFAMILY beta-beta-alpha zinc fingers 30 117 IPR036236 -
Gso20g0356 496 SUPERFAMILY beta-beta-alpha zinc fingers 368 395 IPR036236 -
Gso20g0356 496 Gene3D Classic Zinc Finger 344 435 - -
Gso20g0356 496 Pfam Zinc finger, C2H2 type 369 391 IPR013087 -
Gso20g0356 496 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 496 IPR044653 GO:0003700
Gso20g0356 496 Gene3D Classic Zinc Finger 29 117 - -
Gso20g0356 496 Pfam C2H2-type zinc finger 31 52 - -
Gso20g0356 496 Pfam C2H2-type zinc finger 96 119 - -
Gso20g0356 496 MobiDBLite consensus disorder prediction 415 431 - -
Gso20g0356 496 MobiDBLite consensus disorder prediction 119 163 - -
Gso20g0356 496 SMART c2h2final6 95 117 IPR013087 -
Gso20g0356 496 SMART c2h2final6 30 52 IPR013087 -
Gso20g0356 496 SMART c2h2final6 369 391 IPR013087 -
Gso20g0356 496 MobiDBLite consensus disorder prediction 408 469 - -
Gso20g0356 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 369 396 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0356 Gso-Chr20 8915762 8917252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0356 32 128 C2H2 Transcription Factor Family AT2G26940 41.176 1.02e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0356 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0356 - - gmx:102667832 944.11