Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso20g0355 | ATGGATCAAAAAGATAAGCATGCGGTTTCAGATCATCATGGGTGGGTTAAATCTTGCAAGAAAGAGAAGATGAAGCAGCAACGATCGCTTCTTCTGGGTTCTTGCCAAGCTGAGTTAGAATCACCATCTGCAGCGAAAAGCCCTTCACGAACGGTACGTGAGTGCAATATTTGCGGCAAGGTTTTCAGCAGCGGTAAGGCTTTGGGGGGTCACAGAAGATCGCACTTTCAGAAGCACCAGAAGAAGGTAAAAGTCCGTTTCACTAATCACTCATCAAAAGAAGCTGGTGATACCAGCAACAATATTAATAGGGCTAGCAATTGTGATTATGATGCTGATGATGACGGAAAACGCGTTTGTTGCATTTGCAAGAAGGAATTCCCCACAAAGAATGCTTTGTTTGGTCACATGCGATCTCACCCTGAGAGGTCATGGAGGGGTGTGTCTCCTCCCACTCATTTTCCCAATAAGAACTCTTCGTCTTCTTCTTCTCTCTCTTCTTCTTTCTCTTTTTCTTCCCATAATTCTGATTCTATGGAGAAAAACATGGAAGAGGATCGTGATGATTATGATGAATGTGTTGGTGTTGGAGCTGTTTGTGATGGTGGGGGTAATAGGGCTATTGATCTTTCAACTTTTACTTGCCCCAGTTGGCTTAAGACTGATGTGAGAGGAAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTTGCTTACTTAAGTGTTTACTCTAAGTACTTTTGTGGTGAGTCTAATGGGGTTTCTCCGAAGAAAGATGAAGTGCGGCCGAAGAGTGCTCCACCTCTAATCAAGCTTGGCAAAAGGAAGATTAATTTTAGTGGATCGTCTTCAAGTAAGAAGCATGAGGTGAAAAAGATAAAATTTTATCTGAAGGGTGAATTGAAAATCGGAAAGAGAAATGACGCGGATGGTGAAGATGATGATGATGAGGATGAGAAGTTGAATAGGTGCAAGGGTTTATCTGAATCTGAGGTGGAAGATGAGGAGGGTTTCGACAATGTGATCACTGAGGTGGTTGCTCCCGATAGGATGCAAGATGACGTTGATGAAAGGAAGGGGAAGAGGGTGGTGGATCATAAAGGGAAGAACATTAAGAAACTGGTGCTGAAATCTATGGCAAAAGAGAAAGAGAATGAGAAAGTTGGTGGCTACAAATGTGGTGCTTGTGGGAAGATTTTCTCAACTTTTCAAGGCTTAGGAGGACACAGATCAGTCCACAAGGGGAAGAACAACAACACTGTAATAATCATGGACGAGTCCAACCACAACCACTCCGAAGCTCTTGGTGATCAAGAAAACAACTCTTCCAGCTCTAGTAACATGCACAAGGTGGATGAAGCACCGTTGCCAACCGACGAGACAAGAGTGAATGAAGAAATACCAGAAACACCACCATTGCTGGCAGACGAGGCATGTCAATCTTCTTTAGGTGTCAAGAAATTGGACTTTGATCTGAATGAATTGCCTTGTGCTATGGAGGATTGA | 1509 | 0.4341 | MDQKDKHAVSDHHGWVKSCKKEKMKQQRSLLLGSCQAELESPSAAKSPSRTVRECNICGKVFSSGKALGGHRRSHFQKHQKKVKVRFTNHSSKEAGDTSNNINRASNCDYDADDDGKRVCCICKKEFPTKNALFGHMRSHPERSWRGVSPPTHFPNKNSSSSSSLSSSFSFSSHNSDSMEKNMEEDRDDYDECVGVGAVCDGGGNRAIDLSTFTCPSWLKTDVRGRKCIGAYEAAETLAYLSVYSKYFCGESNGVSPKKDEVRPKSAPPLIKLGKRKINFSGSSSSKKHEVKKIKFYLKGELKIGKRNDADGEDDDDEDEKLNRCKGLSESEVEDEEGFDNVITEVVAPDRMQDDVDERKGKRVVDHKGKNIKKLVLKSMAKEKENEKVGGYKCGACGKIFSTFQGLGGHRSVHKGKNNNTVIIMDESNHNHSEALGDQENNSSSSSNMHKVDEAPLPTDETRVNEEIPETPPLLADEACQSSLGVKKLDFDLNELPCAMED* | 503 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso20g0355 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
| Gso20g0355 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
| Gso20g0355 | 502 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
| Gso20g0355 | 502 | SMART | c2h2final6 | 392 | 414 | IPR013087 | - | |
| Gso20g0355 | 502 | SMART | c2h2final6 | 118 | 140 | IPR013087 | - | |
| Gso20g0355 | 502 | Pfam | C2H2-type zinc finger | 392 | 415 | - | - | |
| Gso20g0355 | 502 | Pfam | C2H2-type zinc finger | 119 | 142 | - | - | |
| Gso20g0355 | 502 | Pfam | C2H2-type zinc finger | 52 | 75 | - | - | |
| Gso20g0355 | 502 | Gene3D | Classic Zinc Finger | 52 | 140 | - | - | |
| Gso20g0355 | 502 | SUPERFAMILY | beta-beta-alpha zinc fingers | 119 | 414 | IPR036236 | - | |
| Gso20g0355 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 392 | 419 | IPR013087 | - | |
| Gso20g0355 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 120 | 140 | IPR013087 | - | |
| Gso20g0355 | 502 | MobiDBLite | consensus disorder prediction | 142 | 187 | - | - | |
| Gso20g0355 | 502 | MobiDBLite | consensus disorder prediction | 435 | 452 | - | - | |
| Gso20g0355 | 502 | MobiDBLite | consensus disorder prediction | 151 | 177 | - | - | |
| Gso20g0355 | 502 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 79 | IPR036236 | - | |
| Gso20g0355 | 502 | PANTHER | ZINC FINGER PROTEIN ZAT4-LIKE | 1 | 502 | - | - | |
| Gso20g0355 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 394 | 414 | IPR013087 | - | |
| Gso20g0355 | 502 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Gso20g0355 | 502 | MobiDBLite | consensus disorder prediction | 432 | 473 | - | - | |
| Gso20g0355 | 502 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 502 | IPR044653 | GO:0003700 | |
| Gso20g0355 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 118 | 140 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso20g0355 | Gso-Chr20 | 8910814 | 8912801 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso20g0355 | 55 | 151 | C2H2 Transcription Factor Family | AT2G26940 | 40.196 | 2.02e-15 | 75.1 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gso20g0355 | zf-C2H2_6 | 0.00012 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso20g0355 | - | - | gmx:102667832 | 927.932 |