Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0352 ATGTCAAGTGGGACAACATACTGGTGTTACACATGCAGGCAGCCAATCTGGCTTGAAGGGAGGGAAGGCTTTTGCCCCTACTGCGATGGAGGCTTTGTGCAAGAACTCAACGAGATGCGAGGAGTTGCGCGCCAACACGGCTTCTCAACGCGGATGGAAGATGTTCATCAAATGCCTGACATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAACCGAGCATTCGGGTTAGAGATGCTGTTGATAACTTTATGAGGCAGAGAATGGCCGGAAGATACACAAACTTTGATGTGAGAAGGAGGTCTGATTCTGGTTCTGGTTCTGGTTCTATTCTTATTCCTGATGAGACTTGGGGTGTCTTTAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGCACCAGGGTTCACCAATTCTAATGGGAGCTCAAGAGGGGGTCCTAGGGGTGTTGATTTTGGTGACTACTTTCTTGGTCCTAGACTAGAAGGACTCATTGAACAACACATTTCGAATGACCGGCTTGGTCCACCGCCTGCATTGCGCTCTTCGATTGATGCAATGCCAACTATCAAGATCACACATGAGCACCTTGAGTCTGATTCACACTGTCCAGTTTGTAAGGAACGATTTGAACTTGGTTCCAAGGCAAGGAAGATGCCATGTAACCACATTTACCACTCAGATTGTATTGTTCCATGGTTAGTTCTTCATAACTCGTGTCCTGTGTGTCGTGTTGAGCTGCCACCGAAAGAACATACTAGTTCTCGAGGTAGACGTATTTGGGGAGGTAGAAATGGTAATGACAGTGGTAGTGACAATGATATCTCTAGGGGAAGGGAGAATACACAGATGAACAATGGAAGGAGAAATCTGCTATCATATTTGTGGCCATTTCGGTCCTCTAGTTCAAGTACTTAG 927 0.4574 MSSGTTYWCYTCRQPIWLEGREGFCPYCDGGFVQELNEMRGVARQHGFSTRMEDVHQMPDIMDAVRAVMEQRGSEPSIRVRDAVDNFMRQRMAGRYTNFDVRRRSDSGSGSGSILIPDETWGVFSSGPYLIFHGQAPGFTNSNGSSRGGPRGVDFGDYFLGPRLEGLIEQHISNDRLGPPPALRSSIDAMPTIKITHEHLESDSHCPVCKERFELGSKARKMPCNHIYHSDCIVPWLVLHNSCPVCRVELPPKEHTSSRGRRIWGGRNGNDSGSDNDISRGRENTQMNNGRRNLLSYLWPFRSSSSST* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0352 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 253 IPR013083 -
Gso20g0352 308 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Gso20g0352 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 307 - -
Gso20g0352 308 SMART ring_2 206 246 IPR001841 -
Gso20g0352 308 MobiDBLite consensus disorder prediction 251 289 - -
Gso20g0352 308 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Gso20g0352 308 SUPERFAMILY RING/U-box 186 255 - -
Gso20g0352 308 CDD RING-H2_RNF126_like 206 247 - -
Gso20g0352 308 MobiDBLite consensus disorder prediction 269 289 - -
Gso20g0352 308 Pfam Ring finger domain 205 247 IPR001841 -
Gso20g0352 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0352 Gso-Chr20 8724019 8726988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0352 150 298 C3H Transcription Factor Family AT5G01980 33.333 9.73e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0352 K11982 - gmx:100819514 580.096