Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0347 ATGGCCTTAGCTATGGTGGGAGAGGCACTTATCTCTGCTTCTGTGGAGATCTTGTTGGATAGGATAACTTCTGCGGAGTTTCGAGATTTCTTTGCCAATAGAAAGCTGAATGTTTCTCTCTTGGACGAGCTGAAGATAAAGCTGTTGACACTCAATGCTGTGCTCAATGATGCTGAGGAGAAACAGATCACTAATTCAGCAGTGAAGGCATGGCTTAATGAGTTGAAAGATGCTGTTCTAGACGCTGAGGATTTGTTGGATGAAATCAACACAGATTCTCTGAGGTGCAAGGTGGAGGGAGAATTTAAAACCTTTACTAGCCAGGTGAGGTCATTACTTTCTTCTCCCTTTAATCAATTCTATAGGAGCATGAATTCCAAGCTTGAAGCAATATCTAGAAGGCTAGAAAATTTTCTTAAACAGATAGATAGTCTCGGTTTGAAAATTGTCGCTGGCAGAGTCTCTTACAGAAAAGATACAGATCGATCGGTGGAATATGTTGTTGCAAGAGACGATGACAAAAAGAAGCTGTTGAGCATGCTTTTCTCTGATGAAGATGAGAATAATAATCACATACAAGTGCTGACAATATGGGGCATGGGAGGTCTTGGAAAAACAACCCTTGCTCAGAGCCTTTTAAATGATGATGCAGTGCAGAACCATTTCGATCTCAAAGCTTGGGCATGGGTATCTGATCCTTTTGATGTGTTTAAGGCAACAAAGGCAATTGTTGAATCTGCCACTTCTAAAACTTGTGATATTACTAATTTTGATGCTCTTCGTGTTGAATTGAAGAACACCTTTAAAGATAAAAAAATTTTGCTTGTGCTCGATGACCTTTGGAATATGCAGTATCATGATTGGGATCAACTAATAGCCCCTTTTAGCTGTGGGAAAAAGGGAAGCAAAATCATTGTGACAACCCGACATCACAGAATTGCAGAAATCACTCGTACATTTCCCATTCATGAGCTGAAGATTCTTACGGATGACAACTGTTGGTGTATACTTGCTAAACATGCATTTGGAAATCAAGGATATGACAAATATCCAATCCTAGCAGAAATTGGTAGACAAATTGCAACAAAATGCAAGGGTCTACCATTAGCAGCCAAAACATTGGGAGGTCTTTTGCGATCAAATGTTGATGCAGAGTATTGGAATGGAATTCTGAACAGCAACATGTGGGCAAATAATGAAGTTTTAGCAGCTTTATGCATAAGTTATCTTCATCTTCCACCACATCTGAAAAGATGTTTTGCCTATTGCTCAATTTTTCCAAGACAATATTTGTTGGATAGGAAGGAATTGATTCTGTTATGGATGGCTGAAGGCTTTCTTCCACAAATCCACGGAGAGAAAGCAATGGAATCAATAGGTGAAGATTACTTTAATGAATTGTTATCTAGATCTTTAATTGAAAAAGACAAAAATGAGGGAAAGGAACAATTTCAAATGCATGACCTTATTTACGATTTAGCCAGACTAGTCTCTGGTAAGAGATCTTGTTACTTTGAAGGAGGAGAAGTCCCATTAAATGTTCGCCATTTGACATATCCTCAAAGAGAGCATGATGCCTCTAAAAGATTTGAGTGTTTGTATGAGCTAAAGTTTTTGCGCTGCTTTTTACCACTATATGGATATGGATCTTATCCTTATTGTGTATCCAAAAAGGTGACTCATGATTGGCTGCCAAAACTAACATATCTGCGAACATTGTCCTTGTTTAGCTACAGAAATATCACTGAGCTGCCTGATTCAATAAGCAATTTGGTACTATTGCGGTATCTTGACCTTTCCTATACTTCCATCAAAAGTTTGCCAGATGCAGCCTTTAGGCTTTACAATTTGCAGACTTTGAAATTATCAAATTGTGAATCTCTTACGGAGTTGCCTGAACAGATAGGAGATTTGTTACTCTTACGGTATCTTGACTTTTCCTATACTTCCATCAATCGGCTGCCTGAACAGATAGGAAATTTGGTCAATCTACGCCACCTTGATATTAGAGGCACAAATTTGTGGGAGATGCCATCACAAATAAGCAAGCTACAAGATCTCCGTGTGTTGACTTCTTTTGTTGTAGGCAGAGAAAATGGAGTAACTATAAGAGAATTAAGAAAGTTTCCTTACTTGCAAGGTACGCTTTCCATTTTGAGGCTACAAAATGTTGTTGATCCCAAGGATGCTGTTCAAGCTGACTTAAAGAAGAAAGAGCACATTGAGGAGCTTACGCTGGAGTGGGGCAGTGAGCCACAAGATTCACAAATTGAGAAAGACGTACTTCAGAACCTGCAACCATCGACAAATTTAAAGAAACTCAGCATAAGATACTACAGTGGCACAAGCTTTCCTAAATGGTTGAGTGACTATTCGTATTCTTATGTTATAGTCCTTTGCATCACTGATTGCAACTATTGTTTTTCACTTCCACCATTTGGACAACTACCTTCTCTCAAGGAGCTTGTGATAGAAAGGATGAAAATGGTGAAGACAGTTGGTGAGGAATTCTACTACAACAATGGGGGTTCTCTTTCATTTCAACCATTTCCATTGTTGGAGAGTATCCAGTTCGAAGAGATGTCAGAGTGGGAAGAGTGGCTACCATTTGAAGGTGAAGGCCGCAAATTTCCTTTTCCTTGCCTTAAGCGTTTGAGTTTATCAGAATGCCCCAAGTTGAGAGGAAACTTGCCCAACCATCTACCTTCATTGACAGAGGTTAGTATATCAGAGTGTAACCAGCTAGAGGCAAAATCGCATGATCTACATTGGAACACATCAATTGAAGACATAAATATTAAAGAAGCAGGAGAAGACTTGTTGTCCTTGCTTGACAACTTTTCTTATAGGAATCTACGGATTGAAATTGAAAAATGTGACAGCTTGACATCTTTTCCAAGAATAAGACTAGGTGCCAATTGTCTCCAAAGTTTGACTCTTTTTGATATTCCCAATTTGATTTATTTCTCAGCTGGTGGCTTGCCAACGTCATTGCAATCACTTCAAATTTACAACTGTGAGAACTTAGAATTTCTGTCTCCCGAATCATTCCACAAATACATATCACTTGAATGTCTGACAATTTACAAAAGCTGCCATTCCCTGGCGTCCTTACCATTAGATGGTTTCTCTTCCCTGCAATTTCTTTATATCGAGGAATGTCCCAACATGGAAGCAATTACTACTCATGGTGGAACGAATGCTCTCCAATTAACTACACTTGCTGTTGGGAATTGTAAGAAACTTAGGTCACTTCCAGAGCAGATTGATCTTCCTGCCCTTTGTTGGTTATTCCTTAATGGGCTTCCAGAGCTAACATCATTGCCCCCAAGGTGTTTGCCTTCCAGTTTACAAACACTTGAAGTTGAAGTTGGAATGCTATCATCGATGTCTAAACACGAGTTAGGTTTCTTATTCCAACGCCTGACTTCTCTGTTTCGTCTTTCCATTACTGGTTTTGGGGAGGAAGATGTTGTTAACACCCTGTTGAAGGAGTGCTTACTGCCCACTTCCCTGCAATATCTGTCCCTACGACATTTAGATGATTTAAAGTTGTTGGAAGGAAAAGGGCTTCAACATCTCACTTCCCTCACAGAGCTTGCCATCTGGCATTGTAAAAGCCTAGAGTCCTTGCCCGAAGATCAGCTTCCATCCTCTCTTGAATTACTGGAGATAGGTAGTTGTCCTTTACTAGAAGCAAGGTATCAAAGTCGGAAAGGGAAACACTGGTCTAAGATTGCCCACATTCCTGCTATCAAGATAAATGTTGAAGTGATAATATGA 3783 0.3957 MALAMVGEALISASVEILLDRITSAEFRDFFANRKLNVSLLDELKIKLLTLNAVLNDAEEKQITNSAVKAWLNELKDAVLDAEDLLDEINTDSLRCKVEGEFKTFTSQVRSLLSSPFNQFYRSMNSKLEAISRRLENFLKQIDSLGLKIVAGRVSYRKDTDRSVEYVVARDDDKKKLLSMLFSDEDENNNHIQVLTIWGMGGLGKTTLAQSLLNDDAVQNHFDLKAWAWVSDPFDVFKATKAIVESATSKTCDITNFDALRVELKNTFKDKKILLVLDDLWNMQYHDWDQLIAPFSCGKKGSKIIVTTRHHRIAEITRTFPIHELKILTDDNCWCILAKHAFGNQGYDKYPILAEIGRQIATKCKGLPLAAKTLGGLLRSNVDAEYWNGILNSNMWANNEVLAALCISYLHLPPHLKRCFAYCSIFPRQYLLDRKELILLWMAEGFLPQIHGEKAMESIGEDYFNELLSRSLIEKDKNEGKEQFQMHDLIYDLARLVSGKRSCYFEGGEVPLNVRHLTYPQREHDASKRFECLYELKFLRCFLPLYGYGSYPYCVSKKVTHDWLPKLTYLRTLSLFSYRNITELPDSISNLVLLRYLDLSYTSIKSLPDAAFRLYNLQTLKLSNCESLTELPEQIGDLLLLRYLDFSYTSINRLPEQIGNLVNLRHLDIRGTNLWEMPSQISKLQDLRVLTSFVVGRENGVTIRELRKFPYLQGTLSILRLQNVVDPKDAVQADLKKKEHIEELTLEWGSEPQDSQIEKDVLQNLQPSTNLKKLSIRYYSGTSFPKWLSDYSYSYVIVLCITDCNYCFSLPPFGQLPSLKELVIERMKMVKTVGEEFYYNNGGSLSFQPFPLLESIQFEEMSEWEEWLPFEGEGRKFPFPCLKRLSLSECPKLRGNLPNHLPSLTEVSISECNQLEAKSHDLHWNTSIEDINIKEAGEDLLSLLDNFSYRNLRIEIEKCDSLTSFPRIRLGANCLQSLTLFDIPNLIYFSAGGLPTSLQSLQIYNCENLEFLSPESFHKYISLECLTIYKSCHSLASLPLDGFSSLQFLYIEECPNMEAITTHGGTNALQLTTLAVGNCKKLRSLPEQIDLPALCWLFLNGLPELTSLPPRCLPSSLQTLEVEVGMLSSMSKHELGFLFQRLTSLFRLSITGFGEEDVVNTLLKECLLPTSLQYLSLRHLDDLKLLEGKGLQHLTSLTELAIWHCKSLESLPEDQLPSSLELLEIGSCPLLEARYQSRKGKHWSKIAHIPAIKINVEVII* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0347 1260 Gene3D Ribonuclease Inhibitor 555 638 IPR032675 -
Gso20g0347 1260 Coils Coil 41 61 - -
Gso20g0347 1260 Gene3D - 151 320 IPR027417 -
Gso20g0347 1260 Gene3D - 327 407 IPR042197 -
Gso20g0347 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Gso20g0347 1260 Pfam Rx N-terminal domain 13 103 IPR041118 -
Gso20g0347 1260 SMART LRR_typ_2 661 684 IPR003591 -
Gso20g0347 1260 SMART LRR_typ_2 638 660 IPR003591 -
Gso20g0347 1260 SMART LRR_typ_2 591 614 IPR003591 -
Gso20g0347 1260 Pfam NB-ARC domain 174 391 IPR002182 GO:0043531
Gso20g0347 1260 Gene3D Ribonuclease Inhibitor 1119 1254 IPR032675 -
Gso20g0347 1260 Gene3D - 38 134 - -
Gso20g0347 1260 PANTHER DISEASE RESISTANCE PROTEIN RP 621 943 IPR044974 GO:0006952
Gso20g0347 1260 PANTHER DISEASE RESISTANCE PROTEIN RP 51 635 IPR044974 GO:0006952
Gso20g0347 1260 Gene3D - 408 496 IPR036388 -
Gso20g0347 1260 CDD RX-CC_like 13 89 IPR038005 -
Gso20g0347 1260 Gene3D Ribonuclease Inhibitor 641 932 IPR032675 -
Gso20g0347 1260 Gene3D Ribonuclease Inhibitor 956 1118 IPR032675 -
Gso20g0347 1260 SUPERFAMILY L domain-like 485 933 - -
Gso20g0347 1260 PANTHER - 621 943 - -
Gso20g0347 1260 PANTHER - 51 635 - -
Gso20g0347 1260 SUPERFAMILY L domain-like 957 1246 - -
Gso20g0347 1260 Coils Coil 68 92 - -
Gso20g0347 1260 PRINTS Disease resistance protein signature 194 209 - -
Gso20g0347 1260 PRINTS Disease resistance protein signature 267 281 - -
Gso20g0347 1260 PRINTS Disease resistance protein signature 364 378 - -
Gso20g0347 1260 PRINTS Disease resistance protein signature 612 628 - -
Gso20g0347 1260 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0347 Gso-Chr20 8584047 8595701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0347 581 701 WRKY Transcription Factor Family AT4G12020 37.589 3.24e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0347 - - gmx:100800462 2390.92