Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0320 ATGGCTTTCACACTAGACAGGTTTGAGGAGAACATGGTGTTCACTTTAGAGTCTCAGAAGTCAGTGCCAGCACCCTTTCTGACAAAGACATACCAACTTGTTGATGACCCTCACACTGACCACATTGTGTCATGGGGTGAAGATGAAACCACATTTGTTGTCTGGAGGCCCCCTGAGTTTGCAAGAGATCTTCTTCCCAACTATTTTAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGACAGATGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATTCACAGGAGAAAAGCACCACAGCAGCATCACCAACTCTTTCATGACCAATCACCATCCCAAATTTTTCAGCAAGATGAAAATCTCTGCTGGCTTGACACTCCTCTACCATCTCCAAAACCAAACACAGATATTCTAACAGCACTTTCTGAAGACAACCAAAGACTAAGGAGAAAGAACTTCATGCTCTTATCAGAACTCAGCCACATGAAGAGTTTGTACAATGACATCATATACTTCATCCAAAACCATGTAAAACCACCACCCTTTGAGCAAAGAAGCAGCAGTGTTATTCCAAACCTGGTGGAGTTGGACTCATTGCATGAGTCTCCAAATGACATGGGAGTTCGCAGAAGTGCCAAAAGTTGTGTTGTGGATAAGTCTTTGATTACTTCTACTGAGGAATCAAACAGTTCTGTGAAGCTATTTGGGTTCCCTCTAAGTGGCCGAAAGAGATTGCACCCTGATAACACAAATTGTTGA 816 0.4228 MAFTLDRFEENMVFTLESQKSVPAPFLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQIFQQDENLCWLDTPLPSPKPNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRSSSVIPNLVELDSLHESPNDMGVRRSAKSCVVDKSLITSTEESNSSVKLFGFPLSGRKRLHPDNTNC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0320 271 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g0320 271 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g0320 271 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g0320 271 Gene3D - 18 116 IPR036388 -
Gso20g0320 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 266 - -
Gso20g0320 271 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g0320 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 266 IPR027725 -
Gso20g0320 271 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g0320 271 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Gso20g0320 271 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0320 Gso-Chr20 7487201 7489397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0320 10 265 HSF AT1G46264 49.837 2.47e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso20g0320 HSF_DNA-bind 9.2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0320 K09419 - gmx:100806150 564.688