Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0317 ATGGGCAACTGTTGCTCTCAAGGCAACGTTGCCGACGGCCCGGCTGACGACTCTGCCGCCGCCAATGACAAGGGAGAAGCTAACCAACAAGGTAGTAATAACCATGCAAACGACAACAATGATAATTCCACAAACCCTACCACTGCCCCAACGACGACATCAAAGCCACCACCCACGGTCACCCCACCCACTTCAAAACCCTCGAAACCGGCTGCAATGGGCCCAGTCCTCGGCCGGCCGATGGAGGACGTGAGAGCCACGTACACAATAGGTAAAGAGCTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGCACAAACAAAGCCACGGGGCAACAATTTGCATGCAAAACAATTGCAAAGAGGAAGCTCGTGAACAAGGAGGACATAGAGGACGTGAGAAGAGAGGTTCAAATCATGCACCATCTCTCGGGTCAACCTAACATTGTGGAACTTAAGGGTGCATATGAGGACAAACAATCGGTGCATTTGGTCATGGAACTTTGTGCGGGTGGTGAGCTTTTTGATCGTATAATTGCTAAGGGACATTACACTGAACGTGCCGCGGCTTCGTTGTTAAGAACCATAATGCAAATTATTCACACTTTCCACTCCATGGGTGTCATTCATAGAGATCTTAAGCCCGAGAATTTCCTCATGTTGAATAAGGATGAAAATTCACCCGTCAAGGCCACGGATTTTGGTCTATCAGTTTTTTTCAAAGAAGGAGAGACGTTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAAGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTAAGTGGTGTCCCTCCGTTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCATTGTCCAGTGCAGCAAAGGATCTTGTAAGGAAAATGTTGACCACAGACCCCAAACAAAGACTGACAGCACAAGAAGTTTTAAATCATCCTTGGATCAAGGAGGACGGCGAAGCACCAGATAAGCCACTTGACAATGCTGTACTGAATAGGCTCAAACAATTTAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGGATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACAAAGCTAACAGAGCAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACCGCAACAATGCACATGAACAGAATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTTATTACCACTGAAGAACTAGAACAAGCCCTCCGTGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGACGCATTAACTACGATGAGTTTGCGGCAATGATGAGAAAAGGAAACCCAGAAGTTATGACGAAGAAGAGGCGTGATTCATTGCCATTGCCATTGCCATAA 1641 0.4522 MGNCCSQGNVADGPADDSAAANDKGEANQQGSNNHANDNNDNSTNPTTAPTTTSKPPPTVTPPTSKPSKPAAMGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTNKATGQQFACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIMQIIHTFHSMGVIHRDLKPENFLMLNKDENSPVKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGHVDFTSDPWPSLSSAAKDLVRKMLTTDPKQRLTAQEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMRKGNPEVMTKKRRDSLPLPLP* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0317 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 534 - -
Gso20g0317 546 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Gso20g0317 546 Pfam EF-hand domain pair 463 526 IPR002048 GO:0005509
Gso20g0317 546 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Gso20g0317 546 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Gso20g0317 546 Gene3D - 354 529 - -
Gso20g0317 546 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Gso20g0317 546 SUPERFAMILY EF-hand 386 526 IPR011992 -
Gso20g0317 546 MobiDBLite consensus disorder prediction 1 80 - -
Gso20g0317 546 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Gso20g0317 546 SUPERFAMILY Protein kinase-like (PK-like) 75 374 IPR011009 -
Gso20g0317 546 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Gso20g0317 546 CDD STKc_CAMK 88 345 - -
Gso20g0317 546 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Gso20g0317 546 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0317 546 MobiDBLite consensus disorder prediction 23 50 - -
Gso20g0317 546 SMART efh_1 429 457 IPR002048 GO:0005509
Gso20g0317 546 SMART efh_1 465 493 IPR002048 GO:0005509
Gso20g0317 546 SMART efh_1 500 528 IPR002048 GO:0005509
Gso20g0317 546 SMART efh_1 393 421 IPR002048 GO:0005509
Gso20g0317 546 MobiDBLite consensus disorder prediction 51 69 - -
Gso20g0317 546 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Gso20g0317 546 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Gso20g0317 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gso20g0317 546 ProSiteProfiles EF-hand calcium-binding domain profile. 500 531 IPR002048 GO:0005509
Gso20g0317 546 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0317 546 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0317 546 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Gso20g0317 546 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 32 534 - -
Gso20g0317 546 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0317 Gso-Chr20 7278841 7284114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0317 1 539 EF-hand Containing Proteins AT5G12180 79.630 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso20g0317 Pkinase 1.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0317 K13412 - gmx:100781355 1035.02