Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0315 ATGGCGGAAATGGCAGTGTCTCTGCTATCACTAATAAGAGATGAAGCAAATCTGCTTTGGAGCATCTCCAAAGAATTTGCGGACATACAAAAAGAGTTAGATTACATTCAAAGCTCTCTTGAGAAGGCAGATAGAATGGCTTCAGAAGAAGGAGACAACACAACCAAGGGAGTCAAAGCATGGGTGAAGGAGTTGAGAGAAGCATCTTTCCGCATAGAAGATGTCATTGACGAATACATGATCTTTGTTGAACAACAGCCTCATGATGATGCTTTTGGTTGTGTAAATTTCCTCTTCGAGTGCAATATCACTCACTTCATTGAATCTTTGAAGCGGCGTCATCAAATAGCATCAGAGATTCAGCAGATTAAGTCATTTGTTCAAGGAATCAAGCAAAAAGGTATTGATTATGACTACCTAATCAAACCTTCTCTTGAGAAAGGATCAAGCAGCTACAGAGGGAGCCAAAGTGTCCAATGGCATGACCCTCGAAAGCATTCACGTTACCTTGAAGAAGCTGAAGTTGTTGGCCTTGAAGGCCAAAGAGATAAATTGATTGGTTGGTTAGTGGAGGGACCATCAGAGCGCACTGTCATCTCTGTTGTAGGAATGGGCGGGTTAGGAAAAACTACTCTTGCCGGCAGAGTTTTCAACAATCAGAAGGTGACTGCTCACTTTGAATGTTGTGCATGGATCACGGTGTCTAAAACCTACACTGAGGAAGGAGTGTTGGGAAAATTGTTGAAGAAATTGTACGAAGAAGACAAACAAGAGAAAGCTCCTCAAGGAATTGATGAAATGGATCGAGATTCATTGATTCATAAAGTGAGAAAGTATTTGCAACCAAAGAGGTACTTTGTTATTTTTGATGATGTGTGGAGTATAGAACTGTGGGGTCAGATTCAAAATGCCATGCTTGATAATAAAAAAGGAAGTAGAGTGTTTATCACAACTAGGATGGATGGTGTTGTAGACTCTTGTATGATATCTCCTTTTGATATGGTGCATAAGCTGAAACCTTTAACTAAAGAAGAATCTATGGAACTCTTTTGCAAGAAGGCATTTCCATGTCACAATAATGGAAATTGTCCAGAAGATTTCAAGAAAATTTCTTCTGACTTTGTTGAAAAATGTAAGGGTTTACCATTGGCAATTGTGGCTATTGGTAGTCTTTTATCAGGCAAAACACAGACCCCATTTGAATGGGAAAAAATTAGGCGAAGCCTGAGTTCAGAGATGGACAAAAATCCCCATTTAATTGGCATAACAAAGATTTTAGGCTTCAGTTATGATGATCTGTCATATCATCTAAAACCATGCTTACTGTATTTTGGAGCATATCCCGAAGACTATGAAGTTAATTCAAAAAGATTAATTTGGCAGTGGGTAGCTGAAGGATTTGTAAGAGAGGAAGAAGGAAAAACTTTAGAGGACACTGCACAACAATATTTTTCAGAGTTGATTGGCAGAGGTTTAGTGCAAGTCTCTTCATTTACCATAGATGGCAAAGCTAAGAGTTGTCGTGTTCATGACTTACTACACGATATGCTTCTTAAAAAATCCAAGGATTTAAGTTTCTGCCAGCATATCATTAAAGAAGATGAGTCGATGTCAAGTGGGATGATTCGGCGCTTGTCAATAGAAACTATTTCCAATGATTTACTGGGGAGAAATGAAAGCTTACACACCCGGTCACTGCTTGTTTTTGCAGAAGAATTATGTACCACCAACTTTTTGGAAATAATCCCTACAAAATATAGGCTATTGAAGGTACTTGATTTTAAAGATATTCTACTGTATTCTGTTTCTGTTCCTGAAAATTTGGGAAATCTAGCACACTTGAAGTATTTAAACCTGAGAAGTTCAAAGATGCCAACTCAACTTCCAGAATTCATCTGTAAGCTCCACAACCTGGAGACCTTGGACATAAGGGATACAGATGTCGAGGAAATTCCAAAGGAGATTTGCAAGCTAAGAAAGCTACGACATCTTTTGGGTGATTATATAACATTGTTTCAATTGAATGGTCTCGGAGGCATGGCATCCCTACAAACGTTGCGTCATGTCAAGCTAACTATGACTAATGATGATGGCGACAACGACAACGACAATGACAACGACAACAATGACCAGGAGGTGGAGGGTGATTATATAACATTGTTTCAATTGAATGGTCTCGGAGGCATGGCATCCCTACAAACGTTGCGTCGTGTCAAGCTAACTATGACTAATGATGATGGCGACAACGACAACAATGACAAGGAGGTGGAGGGGATAATGCTTATTAAGGAGGATGTTGAAGTAGAATTAATCAGAGAACTGGGAAAGCTGAAGCAGTTAAGGAACTTAAGCTTGACTAGTGTCAAGGAAGAACAGGGAAGCGCTCTATGTTCCTCACTGAATGAGATGGCAAACTTGGAGAAACTACGCATTGAAACAACTGCAGGTGGAGTCATTGATTTACCTATTATTTCACCTCTGCCGATGCTTCAGAAGCTTCGCCTGGATGGGAAGTTAAAAAAGTTTCCAGAGTGGGTTCCACAACTCCAAAGTCTTGTAAAATTATCTTTGAGATCCTCCCAGTTAACCATTGATCCATTGAAATCACTACAAAATATGCCACATTTGTTATTCCTCGAAATGTTGGATGCTTATGAAGGTGAAAGTTTGTATTTTGAAAATGGAGGATTTCATCAATTAAAGGAACTATCTCTCGGATTCTTCCCTAACTTGAAATCCATCATTATAGATAAAGGAGCACTGTATTCTTTGGAAAAGCTCAAAATTTGGAAAATAATGGAAATCAAGACAGTACCTCCTGGCATTCAACACTTGGAAAAACTTCAAGTTCTCGTTATAGACCATATGTCCGATGAATTGATCAATGAGTGCATTACTCCCAATGAAGGACCACAGCACCCAATCATCCAGCATGTACCCCTTGTAAAAGTTACTGTCGGAGACTACGAACAAGGAATAAAAACTCACATTATTCATCACTCAAGACATTAG 3012 0.3918 MAEMAVSLLSLIRDEANLLWSISKEFADIQKELDYIQSSLEKADRMASEEGDNTTKGVKAWVKELREASFRIEDVIDEYMIFVEQQPHDDAFGCVNFLFECNITHFIESLKRRHQIASEIQQIKSFVQGIKQKGIDYDYLIKPSLEKGSSSYRGSQSVQWHDPRKHSRYLEEAEVVGLEGQRDKLIGWLVEGPSERTVISVVGMGGLGKTTLAGRVFNNQKVTAHFECCAWITVSKTYTEEGVLGKLLKKLYEEDKQEKAPQGIDEMDRDSLIHKVRKYLQPKRYFVIFDDVWSIELWGQIQNAMLDNKKGSRVFITTRMDGVVDSCMISPFDMVHKLKPLTKEESMELFCKKAFPCHNNGNCPEDFKKISSDFVEKCKGLPLAIVAIGSLLSGKTQTPFEWEKIRRSLSSEMDKNPHLIGITKILGFSYDDLSYHLKPCLLYFGAYPEDYEVNSKRLIWQWVAEGFVREEEGKTLEDTAQQYFSELIGRGLVQVSSFTIDGKAKSCRVHDLLHDMLLKKSKDLSFCQHIIKEDESMSSGMIRRLSIETISNDLLGRNESLHTRSLLVFAEELCTTNFLEIIPTKYRLLKVLDFKDILLYSVSVPENLGNLAHLKYLNLRSSKMPTQLPEFICKLHNLETLDIRDTDVEEIPKEICKLRKLRHLLGDYITLFQLNGLGGMASLQTLRHVKLTMTNDDGDNDNDNDNDNNDQEVEGDYITLFQLNGLGGMASLQTLRRVKLTMTNDDGDNDNNDKEVEGIMLIKEDVEVELIRELGKLKQLRNLSLTSVKEEQGSALCSSLNEMANLEKLRIETTAGGVIDLPIISPLPMLQKLRLDGKLKKFPEWVPQLQSLVKLSLRSSQLTIDPLKSLQNMPHLLFLEMLDAYEGESLYFENGGFHQLKELSLGFFPNLKSIIIDKGALYSLEKLKIWKIMEIKTVPPGIQHLEKLQVLVIDHMSDELINECITPNEGPQHPIIQHVPLVKVTVGDYEQGIKTHIIHHSRH* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0315 1003 Gene3D - 430 521 IPR036388 -
Gso20g0315 1003 Gene3D - 161 330 IPR027417 -
Gso20g0315 1003 PANTHER DISEASE RESISTANCE PROTEIN RP 26 951 IPR044974 GO:0006952
Gso20g0315 1003 Pfam NB-ARC domain 180 431 IPR002182 GO:0043531
Gso20g0315 1003 CDD RX-CC_like 2 131 IPR038005 -
Gso20g0315 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 444 IPR027417 -
Gso20g0315 1003 SUPERFAMILY L domain-like 508 957 - -
Gso20g0315 1003 Pfam Rx N-terminal domain 7 88 IPR041118 -
Gso20g0315 1003 Gene3D Ribonuclease Inhibitor 750 965 IPR032675 -
Gso20g0315 1003 Gene3D Ribonuclease Inhibitor 574 744 IPR032675 -
Gso20g0315 1003 Coils Coil 1003 1003 - -
Gso20g0315 1003 PRINTS Disease resistance protein signature 198 213 - -
Gso20g0315 1003 PRINTS Disease resistance protein signature 279 293 - -
Gso20g0315 1003 PRINTS Disease resistance protein signature 378 392 - -
Gso20g0315 1003 PRINTS Disease resistance protein signature 609 625 - -
Gso20g0315 1003 Gene3D - 340 429 IPR042197 -
Gso20g0315 1003 Gene3D - 1 117 - -
Gso20g0315 1003 PANTHER - 26 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0315 Gso-Chr20 7234856 7238516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0315 171 411 WRKY Transcription Factor Family AT4G12020 24.291 1.06e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0315 K13457 - gmx:100787762 1293.49