Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0308 ATGGCAGCATGCTTGAATCCACCTAGGCTATCTAGCACCGAAGATGACTCTGTGATACTCTATTCAACTTCTAATTCTCCTGAAGAGTCCAATAGTCCTTCTTCTTCCTCTTTCTACCATTCACCACCACCATCACTATATCAATTCAGAACTGAAAACAAACTTTCTGTGAGAAATCTCTGCTACACTTTGCACCCTCATAAGACCACTCCCTTTTCATTTTGTCACCTGACTCAAAAACCAAAGCCAGTAAACATACTCAAGTCAGTCTCTTTTATTGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGAAAGTCCACCCTTCTGCGAATCATCGCCGGAAGGGTAAAAGATGAAGGTTTTAATCCTAAAAGTGTCTCAATCAATGATCAGCCTATGACTACTCCAGTTCAGTTGAGGAAGATATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCCATGCTAACTGTGAAAGAAACTTTGTTGTTTAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAAGGATAGGGAATTGAGAGTAGAAAGCTTGTTGCAAGAGCTTGGCCTTTTTCATGTTGCTGATAGTTTTGTTGGAGATGAAGAGAATAGAGGGATATCAGGTGGGGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCACCAATTTTGCTTCTAGATGAACCAACATCAGGTCTAGACAGCACTTCAGCTTTGCAAGTCATAGAGCTTCTCTCATCAATTGTTAAAGCAAAGCAAAGGACAGTGGTTCTTTCAATACACCAACCCAGCTATAGAATATTGCAGTATATTTCCAAGTTCTTGATCCTTTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAACAGCTAGAGGAAACCGTAAGTAAATTGGGATTTCAAATTCCAACACAACTGAATGCTTTAGAATTCTCCATGGAAATTATACGCGGGTTGGAAGATTCCAGTTCCAAATATGACACTTGCAGCATTGAGGAAATGGAGCCAATTCCAAACCTCATGTGGCCAGAGGAAGAAAACTGTGAAGTCCAAATTGTCCAATCGCAATGTAACAAGGAAAGTTTTGGCAGTCTTTTCTATGCAAACTTGATTGAGATATTGTTTCTCTGCTCAAGATTTTGGAAAATCATTTATAGAACAAAGCAGCTTTTCTTGGCCAGAACAATGCAAGCAATAGTTGGTGGCTTTGGGCTAGGAAGTGTTTACATAAAGATAAGAAGGGATGAAGGAGGAGTTGCTGAAAGATTAGGTCTATTTGCATTTAGTCTTAGTTTTCTCCTCTCTTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAGTGTTCTGATGAAAGAAGCCTCAAGGGGAGCCTATAGGATTTCCTCTTACATGATAGCCAACACTTTTGTCTTTCTTCCATTCTTGTTTGTAGTGTCTATACTTTTTGCTGTTCCTGTGTATTGGCTTGTAGGACTAAACCCTTCCCTTTCTGCCTTCACCTTCTTCACTTTTGTGGTGTGGCTCATTGTGCTCATGGCAAGTTCTTTGGTACTCTTCTTGAGTGCTGTCTCTCCTGATTTCATTTCAGGGAACTCTCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCAAAGGAGAGCATTCCAAAGTATTGGATTTTCATGTACTATGTGTCTCTCTATAGGTACCCTTTGGATGCGCTCCTCACAAATGAGTATTGGAATGTTAGAAGTGAGTGTTTCTCACATCAAATAGAGGGATCACAGTGCTTGATCACTGGGTTTGATGTGTTGAAGAGTAGAGGACTTGAAAGGGATAACAGGTGGATGAATGTGGGAATAATGTTGGGATTCTTTGTGTTGTATCGTGTTCTTTGTTGGATAATACTTGCACGAAAGGCCTCCAAGACAACACTATAA 1971 0.4084 MAACLNPPRLSSTEDDSVILYSTSNSPEESNSPSSSSFYHSPPPSLYQFRTENKLSVRNLCYTLHPHKTTPFSFCHLTQKPKPVNILKSVSFIARSSEIVAVVGPSGTGKSTLLRIIAGRVKDEGFNPKSVSINDQPMTTPVQLRKICGFVAQEDNLLPMLTVKETLLFSAKFRLKEMTPKDRELRVESLLQELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLEQLEETVSKLGFQIPTQLNALEFSMEIIRGLEDSSSKYDTCSIEEMEPIPNLMWPEEENCEVQIVQSQCNKESFGSLFYANLIEILFLCSRFWKIIYRTKQLFLARTMQAIVGGFGLGSVYIKIRRDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTFVFLPFLFVVSILFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWIFMYYVSLYRYPLDALLTNEYWNVRSECFSHQIEGSQCLITGFDVLKSRGLERDNRWMNVGIMLGFFVLYRVLCWIILARKASKTTL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0308 656 Pfam ABC-2 type transporter 270 337 IPR043926 GO:0140359
Gso20g0308 656 Gene3D - 70 337 IPR027417 -
Gso20g0308 656 Pfam ABC-2 type transporter 382 590 IPR013525 GO:0016020|GO:0140359
Gso20g0308 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 306 IPR027417 -
Gso20g0308 656 Pfam ABC transporter 87 240 IPR003439 GO:0005524
Gso20g0308 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 649 - -
Gso20g0308 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 3 649 - -
Gso20g0308 656 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Gso20g0308 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 313 IPR003439 GO:0005524
Gso20g0308 656 SMART AAA_5 96 298 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0308 Gso-Chr20 7097920 7100124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0308 84 300 Calmodulin-binding Proteins AT2G36910 30.222 1.46e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0308 K05681 - gmx:100783883 1243.41