Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0307 ATGACAAACAATTCCTTTGCAATTTCCCACTCCCAAAACTTCTCCTCTGACTCAAGATCGACATTCTTTTGGGACAACCACACCGGCTCCTCCTCTCAATGCCCCCACCATCCACCACCACTTGCTGGTACAAACCAGCCCCAAGAGAATCTCCTTCTCCCAACCCCACATCCTAGGAAGCCACGTGGCAGGCCACCAGGCTCCAAGAATAAGCAAAAGATCATTTCCTTCCCTGTGGCCCAACCCAGTGAGCCATTTGTGAGGATCGTCATCATCAATGTGGACCCAGGTAGGGACATCATGGAGTCCATTCTTGATGTTGCTCGCCAAGGTCACGTCAACCTCACTGTCCTTAGCACCTCTGGCACAGTCACCAAGGTGACCCTTCAGAACTCACTCCATGGGGCTGCTGCCCTAACACTCCATGGGCCCTTCACCTTGCTTTCCCTCAATGGCTCATACTTAATCAACAACCACCACAACCTTAACTCTGGAGCCACCCTTCCTCCTCCTTCATCCTTTGGAATCCACCTCTCCACCTCTGGAGGCCAAGCCATTGGTGGTGCCATTGGCGGCCAAGTCATTGCTGGTGACAATGTTAAGATAACGGTCTCCACCTTTTGGAATCCTGAGATGTACAAGTATATTCCTGAAGGAAACAAAGGTGGCAATGACGATAACAACGATAGGGAAAATAATTATAACAATAACCCTATTGATTGCAATGGGGGGTGGAAACCAATTGGGGTTCAATATGGTTAG 762 0.4961 MTNNSFAISHSQNFSSDSRSTFFWDNHTGSSSQCPHHPPPLAGTNQPQENLLLPTPHPRKPRGRPPGSKNKQKIISFPVAQPSEPFVRIVIINVDPGRDIMESILDVARQGHVNLTVLSTSGTVTKVTLQNSLHGAAALTLHGPFTLLSLNGSYLINNHHNLNSGATLPPPSSFGIHLSTSGGQAIGGAIGGQVIAGDNVKITVSTFWNPEMYKYIPEGNKGGNDDNNDRENNYNNNPIDCNGGWKPIGVQYG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0307 253 MobiDBLite consensus disorder prediction 1 72 - -
Gso20g0307 253 Gene3D - 86 216 - -
Gso20g0307 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 36 238 - -
Gso20g0307 253 MobiDBLite consensus disorder prediction 219 240 - -
Gso20g0307 253 MobiDBLite consensus disorder prediction 1 52 - -
Gso20g0307 253 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 214 - -
Gso20g0307 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 238 IPR014476 GO:0003680
Gso20g0307 253 ProSiteProfiles PPC domain profile profile. 83 229 IPR005175 -
Gso20g0307 253 CDD DUF296 88 181 IPR005175 -
Gso20g0307 253 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 208 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0307 Gso-Chr20 6894738 6895499 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0307 59 233 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.078 9.57e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0307 - - gmx:102670527 462.611