Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0298 ATGACCAACAATTCCATGGCAATCTCAACCTCTCAGAACTCCGTCTCCTTCGACTTAGACTTGACATCCTCTTGGCTCAACCACACTAGCTCCTCCTCCCAGTGCCCTCGTTGTCCACCATCACCAGCTACAAACCAACCACTAGAGAATCTCCCTCTTACAAACCCACCCACCAAGAAGCCACATGGCAGGCCCGCAGGCTCCAAGAACAAGCCCAAGATCACCCCCTTCCTGGTGGCCCAACCTGTGGAACCCTGCATGAAGGTCATCATTGTCAATGTGACCCCGAGCAGCGATATCATTGAGTCCATTCTTGATGTTGCTCATCGAGGCCATGTTAGCCTCACTGTCCTTAGTGCCTCTGGAACGATCACCGGAGTAACCCTCAACAACTCTTCGCATGGTGTTGATGCCCTCACACTTCGCGGGCCCTTCACCTTGCTCTCCCTCAATGGCTCATACTTATACAACAACCACTACGCCCTTCACCCTGGAGCCACCCCTGCCCCTCCCTTATCATTTGGGATCAGCTTTTCCACCTCTCAAGGGCAAGTCTTTGGCGGTGCCATTGGTGGTAGAGTCATTGCCGATAATGATGTCAGCCTTACAATTTGCACCTTCAAGAACCCTGTGATGTACAAGTATGCTTCTAGAGACAAAGAAAGGGACAGGGGTGACAATGATAACAACAACAATTATAACAATAACTATAGCTTTTAA 720 0.5014 MTNNSMAISTSQNSVSFDLDLTSSWLNHTSSSSQCPRCPPSPATNQPLENLPLTNPPTKKPHGRPAGSKNKPKITPFLVAQPVEPCMKVIIVNVTPSSDIIESILDVAHRGHVSLTVLSASGTITGVTLNNSSHGVDALTLRGPFTLLSLNGSYLYNNHYALHPGATPAPPLSFGISFSTSQGQVFGGAIGGRVIADNDVSLTICTFKNPVMYKYASRDKERDRGDNDNNNNYNNNYSF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0298 239 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 208 IPR005175 -
Gso20g0298 239 Gene3D - 86 224 - -
Gso20g0298 239 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 215 - -
Gso20g0298 239 MobiDBLite consensus disorder prediction 30 73 - -
Gso20g0298 239 ProSiteProfiles PPC domain profile profile. 84 230 IPR005175 -
Gso20g0298 239 MobiDBLite consensus disorder prediction 218 239 - -
Gso20g0298 239 CDD DUF296 88 196 IPR005175 -
Gso20g0298 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 28 233 - -
Gso20g0298 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 233 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0298 Gso-Chr20 6135665 6136384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0298 59 222 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.143 1.16e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0298 - - gmx:102663194 423.32