Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0296 ATGACCAACAATTCCATGGCAATTTCCAACTCCCAGAACTCCGTCTCCTTCGACTTAGACTTGACATCCTCCTGGCTCAACCACACTAGCTCCTCCTCTCGACTCCCTCGTTGTCCACCATCACCAACTACAAACCAACCCCTAGAGAATCTCCCCCTTACAAACCCATCCACCAAGAAGCCATGTGGTAGGCCCGCGGGCTCCAAGAACAAGCCCAAGACCACCCTTTTCTTGGTGGCCCAACCTGTGGAACCCTACATGAAGGTCATCATTGTCAATGTGACCCCAAGCAGCGATATCATTGAGTCCATTCTTGATGTTGCTCGTCGAGGCCACGTTAGCCTCACTGTCCTCAGTGCCTCTGGAACAATCACTGGAGTAACCCTCAACAACTCTTTGCATGGTGTTGATGCCCTCACACTTCACGGGCCCTTCACCTTGCTCTCCCTCAATGGCTCCTACTTATACAACAACCACTACACCCTTCACCCTGGAGCCACCCCTGCCCCTCCCTTATCCTTTGGGATCAGCTTTTCCACCTCTCAAGGGCAAGTCTTTGGCGGTGCCATAGGCAGTAGAGTCATTGCCGGTAATGATGTTAGCCTTACAATTTGCACCTTCAAGAACCCTGTGATGTACAAGTACGCTTCTAGAGACAAAGAAAGAGACAGGGGTGACAATAATAACAATAACAATTATAACAATAACTAA 711 0.4965 MTNNSMAISNSQNSVSFDLDLTSSWLNHTSSSSRLPRCPPSPTTNQPLENLPLTNPSTKKPCGRPAGSKNKPKTTLFLVAQPVEPYMKVIIVNVTPSSDIIESILDVARRGHVSLTVLSASGTITGVTLNNSLHGVDALTLHGPFTLLSLNGSYLYNNHYTLHPGATPAPPLSFGISFSTSQGQVFGGAIGSRVIAGNDVSLTICTFKNPVMYKYASRDKERDRGDNNNNNNYNNN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0296 236 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 232 IPR014476 GO:0003680
Gso20g0296 236 Gene3D - 86 224 - -
Gso20g0296 236 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 28 232 - -
Gso20g0296 236 CDD DUF296 88 207 IPR005175 -
Gso20g0296 236 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 208 IPR005175 -
Gso20g0296 236 ProSiteProfiles PPC domain profile profile. 84 230 IPR005175 -
Gso20g0296 236 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
Gso20g0296 236 MobiDBLite consensus disorder prediction 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0296 Gso-Chr20 6019835 6020545 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0296 59 222 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.143 8.10e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0296 - - gmx:100777794 438.728