Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0294 ATGTCCACCCCCTCCAACATTTGCCATCACCAGTCGGTCTTTCATGGCCCCAATTTCAAAATAGTGAGCAGGCCAAACGGCTCTAAGAACAAGCCCAAGCCCACCTCCCTCTCAGTTGGCCAACCCATTGAACTGTCTGTGAAACTTGTCACGATCAACATTGTTTTGGGTAGGGATGTCATGGAGAAAATCCTTGACGTTGCTCGTCGTGACCATGTTAGCCTCACCATTCTCAATGCCTCTGGCATGATAAAAAACGTAATTGTTTGCAACCTACCACAAGGTGCCCCTACCTTGCTCATTGGGCCCTTGACCTTGCTCTCCCTCATTACCTTCTACTTATACAACAACCAATACACCCTTCACCTAGGAGCCACCCCTCCCCCTCCATTTTCTTTCAGTATCAAGCTTTGCACATCTCATGGACAAGTCTTCGATGGACTTATTGGTGGTAGCATAATTGTTGGTGACAATGTCAGCCTCATGCAAGAAATATATGGCTTTGGGATCGACCGCATGTACCATGGAAGGAAGGCAATGGATGGTTACACTTTGGTGTATGAACCAGTGAAACTTTCCTGGTTTAAGATTATAGAGTGA 600 0.465 MSTPSNICHHQSVFHGPNFKIVSRPNGSKNKPKPTSLSVGQPIELSVKLVTINIVLGRDVMEKILDVARRDHVSLTILNASGMIKNVIVCNLPQGAPTLLIGPLTLLSLITFYLYNNQYTLHLGATPPPPFSFSIKLCTSHGQVFDGLIGGSIIVGDNVSLMQEIYGFGIDRMYHGRKAMDGYTLVYEPVKLSWFKIIE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0294 199 SUPERFAMILY AF0104/ALDC/Ptd012-like 50 174 - -
Gso20g0294 199 Gene3D - 46 185 - -
Gso20g0294 199 Pfam Plants and Prokaryotes Conserved (PCC) domain 51 161 IPR005175 -
Gso20g0294 199 ProSiteProfiles PPC domain profile profile. 44 189 IPR005175 -
Gso20g0294 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 162 - -
Gso20g0294 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 162 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0294 Gso-Chr20 5987175 5991493 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0294 24 159 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.276 2.73e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0294 - - gmx:102662240 401.364