Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0292 ATGGATTCCTCCTCCCAACACTTTCCACCACCAACACTCACCACTGCCAATCAGCCTCTCATGGCCCCACCTACCAAGAATCCACGTGGTAGGCCCCGCGGCTCAAAGAACAAGCCTAAGTCTACCTCCCTCTTAAGCCAACCAGTTGAGCCCTCTGTGAAGCTTGTCACCATCAATGTTGCTCCAGGTATGGATGTCATGGAGACCATCCTTGATGTTGCTCGTCGTGACCATGTTAGCCTCGTCATTCTTAATGCATCTGGCATGATAAAAAATGCGACTGTTTGTGACTCACCACAAGGTGTCCCTACCTTGCTCATTGGACCCTTCTCCTTGTTCTCCCTCACTGGCTTCTACTTATACAACAACCAGTACGCCCTTCACCCAGGAGCCACCCCTCCCCCTCCGTTTTCCTTTGGGATCAAGCTGTGCGCATCTCATGGACAGGTCTTCAACGGACTTATTGGCGGCAGCGTCATTGCCGGTGATAATGTCAGCCTCATGGTCTCCACCTTCAGAGAACCAAATATTTGCAAATTTATTCCCGAAGGAAAAGAAGTGAACAACAATGACAACAATGCATAA 585 0.4974 MDSSSQHFPPPTLTTANQPLMAPPTKNPRGRPRGSKNKPKSTSLLSQPVEPSVKLVTINVAPGMDVMETILDVARRDHVSLVILNASGMIKNATVCDSPQGVPTLLIGPFSLFSLTGFYLYNNQYALHPGATPPPPFSFGIKLCASHGQVFNGLIGGSVIAGDNVSLMVSTFREPNICKFIPEGKEVNNNDNNA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0292 194 ProSiteProfiles PPC domain profile profile. 49 193 IPR005175 -
Gso20g0292 194 Pfam Plants and Prokaryotes Conserved (PCC) domain 56 173 IPR005175 -
Gso20g0292 194 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 190 IPR014476 GO:0003680
Gso20g0292 194 Gene3D - 54 187 - -
Gso20g0292 194 MobiDBLite consensus disorder prediction 1 48 - -
Gso20g0292 194 MobiDBLite consensus disorder prediction 1 22 - -
Gso20g0292 194 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 190 - -
Gso20g0292 194 CDD DUF296 58 172 IPR005175 -
Gso20g0292 194 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0292 Gso-Chr20 5960871 5961455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0292 26 189 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.273 2.44e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0292 - - gmx:102662114 395.586