Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0284 ATGACTTCCTCACTCGTGAAGATCCAAGGTGAACAGGTTCTCACCAACGACTTTCAGGACCTTTCAATCAAAGATCTGGGTGAGAAAGGAAGTGAGGCAGAGATTCACGAGGTGGGGTATGGAGGCCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATCCTTCATTGGGCTACATACCGTGAGAAAGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGCCTGCTACTTCGAGCCTCATGGTTCACACCTTTATCTGTTGAAGAACATGTGGCTCATGAAGATGTATATGAAGACCTAGAAGATTATTATCAGTACGAGGATGATGATGATATGGATGAAGCTTACTATGGTGGTTCGTCCAATCTTCGCGTTATTGGCAACCGTAGATGGGGAGATAATGGTTATGTCAGGGCTGGACGTCAAGAAGCTCGGCCAGTCCATCGTCTGAACTTCCAGGATTCAGGAGCAAGTTCTTCTTCGCGCGAGCCGAAGAAGAAAGAGGTTGGGAAAATTATCACAGGCAGAAGGGCAAAGAGGGCACAGAAAAGGGAAGCGGCTGACAAGGCGGCCGAAGCAAAGCATCTGCAGCATTTAATAAGGTTGGGTAGGAAGTGA 744 0.4677 MTSSLVKIQGEQVLTNDFQDLSIKDLGEKGSEAEIHEVGYGGHGGICAICLDKIVLQETALVKGCEHAYCVTCILHWATYREKVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRASWFTPLSVEEHVAHEDVYEDLEDYYQYEDDDDMDEAYYGGSSNLRVIGNRRWGDNGYVRAGRQEARPVHRLNFQDSGASSSSREPKKKEVGKIITGRRAKRAQKREAADKAAEAKHLQHLIRLGRK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0284 247 MobiDBLite consensus disorder prediction 192 247 - -
Gso20g0284 247 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Gso20g0284 247 SUPERFAMILY RING/U-box 46 96 - -
Gso20g0284 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 247 - -
Gso20g0284 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 113 IPR013083 -
Gso20g0284 247 Pfam Ring finger domain 47 90 IPR001841 -
Gso20g0284 247 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Gso20g0284 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 247 - -
Gso20g0284 247 SMART ring_2 47 89 IPR001841 -
Gso20g0284 247 MobiDBLite consensus disorder prediction 202 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0284 Gso-Chr20 5578719 5583987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0284 3 247 C3H Transcription Factor Family AT5G19430 57.977 9.37e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0284 - - gmx:100785472 454.136