Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0283 ATGCAACACTACCTTGGGGTTAAGATTTTGGATCTGGACAGCTATGCGCCCAAATCTGTGCATGAACTTTCTAAGGGAATCATCGTTTGCTTGTTGCAGACTGATAAAGGTGGTCGAGGTCATGCAGTGAGACTTGCTGGTGGCATACTGCGCACTAAATTGTTCAACGAGGGTGTTGAAGTTGTCTATGGACCTTGGTGGGAGTCCATCATACCAGATTTTATCTGGTTCGAGCAAGGTTGTCTTCTAAAACCTAGGTCTTCAGTTGTGGCTACCACAAGGCGGTTCCCTTCAGATTCCGGTGCCTTTGCAGACTGGTCGGCCCCTCCGTCTGCCATCTCCGGCCGCGGTGACGACCTCTCCCTCGGCTTCAATGCTTCATCCGCCGCCACTGCGCACGGCGGCGGAGCCATGTGGCCGGGGGTATCGAGGTCGTTCAACTACAACCTGGCGCCTCACCATGACATCTTCGTGGTGGCGCCTGCTTCCTCCTTCTACCACCACCACAACGATGTCGTCTTATCCGATCCAAACAACAACAACGGTTCCAACAATTCCAACAACCCTGCAACGGCACACGGAGTCAACGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGTCACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTTCTCCGCCGCAGCAGCAACAGGGTCACATGGAGCGTGACACGTGTGGGGATGGGGGCGGGACTAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCACGGCGGAGGGAGAGGCAGCTCAAGGGGGTGGCGGCGGCCGGTGCTGCGGTTGGGTCCAATGGGGCCACTTCCGGTGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACTACTTCGCATACTTCAACGTCTAATAATACCACTCCTCCGAGGAGTTTTGACACTGGTTGTAGCCCCCAAGATGTGGGTTTCAAGGAGTCACTACCAAGTCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTAACATCAGTGGATGATGGTGGGGAAGATGAGTATGCGTATCAAGCAGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTACCCTAATTTATCTGAATTACATTTGAGTGGTGGTGGTGGTGGAAATGTTACAAGTGGAAGTGATGGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGGTGGATCGTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGGTTGCTACTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAA 1434 0.523 MQHYLGVKILDLDSYAPKSVHELSKGIIVCLLQTDKGGRGHAVRLAGGILRTKLFNEGVEVVYGPWWESIIPDFIWFEQGCLLKPRSSVVATTRRFPSDSGAFADWSAPPSAISGRGDDLSLGFNASSAATAHGGGAMWPGVSRSFNYNLAPHHDIFVVAPASSFYHHHNDVVLSDPNNNNGSNNSNNPATAHGVNVFPLLTATPCLESEGIMGNISHHRNRIQLWQEHESSPPQQQQGHMERDTCGDGGGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNGATSGAKKPRLVASQTTSHTSTSNNTTPPRSFDTGCSPQDVGFKESLPSQVRAPAVFKCVRVTSVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKEGYPNLSELHLSGGGGGNVTSGSDGGRNGISSSSPMVDRSHDVYAASGGGLLLGGSSNYGNHPIN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0283 477 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 154 472 - -
Gso20g0283 477 MobiDBLite consensus disorder prediction 310 351 - -
Gso20g0283 477 Pfam Domain of unknown function (DUF702) 252 410 - -
Gso20g0283 477 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 361 409 IPR006511 -
Gso20g0283 477 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 254 296 IPR006510 -
Gso20g0283 477 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 154 472 IPR007818 GO:0003700|GO:0006355
Gso20g0283 477 MobiDBLite consensus disorder prediction 323 348 - -
Gso20g0283 477 MobiDBLite consensus disorder prediction 417 449 - -
Gso20g0283 477 MobiDBLite consensus disorder prediction 426 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0283 Gso-Chr20 5461123 5469901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0283 90 456 C2H2 Transcription Factor Family AT5G12330 48.522 1.42e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso20g0283 DUF702 2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0283 - - gmx:100815750 904.049