Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0280 ATGGACCTAACCTCCAGCACTACCCACAACACAAACACAACACAAACCTTAGAAGCTGCTAATACTATTACTATTACTACTAAAGCCACCCCACCAATTCCCACCACCACCCTAAAGTCTCTATCTTTCACCAACGGCACACTCAAGCGCCACCCCATCACCACCGTTGCTCCGCCGCCGTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCATCGGCGGCCATGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCCTCCTCCACCGTCCCCTCCGATCCCCGCTCTCTAAAATGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGAACCCCAAGAAAACAACCTCAACAACAACCTTAAAAACAACAACCCCACGTTTTTAAACTGCATCTACAGTACCCCATCAGCTCCAGCACCACTTTCACACCGAGCCATGAGCCAAAGCACATCACCGAGCCTGAGTTCAAGCCCGAGCCACAGCCCAAGCCCGATATCAAGCCCATCACCGCCGCCACTCTCGCACGTGCCACCCTACCACGCTTCAGCGCCACACATGCTTCTAGCCCTCGGCACTGCTTATTCTCCTGCACCCTCTGACGAACACCAATACCAACAAAAAAGCTTCAATTTTTCGATGATGAGGAGCGAGAACGCTAGCAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCATGGATTCTCTGAGAAATTGGGGTGGAGAATGCAGAAAGGGGATGATGGGTTGGTCCAAGAATTCTGCAATGAGATTGGGGTCTCAAGAGGGGTTTTCAAAGTGTGGATGCATAACAATAAGAACACTCTTAGGAAGAAACCTGAAGATGGAATTGGAAATGCAAATGCTCCTCAAAGTAATAATGATGATGGCAATGCTAATGGTGGTAGTGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATAGCAACAACAATGACAATGATATTCACATGAATGAAGAAGATGGGTGTGTCAACAATGTTGTTCATGTTTCTCTTAATGAGATGTCATCTTAG 1077 0.4977 MDLTSSTTHNTNTTQTLEAANTITITTKATPPIPTTTLKSLSFTNGTLKRHPITTVAPPPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSSTVPSDPRSLKCAACGCHRNFHRREPQENNLNNNLKNNNPTFLNCIYSTPSAPAPLSHRAMSQSTSPSLSSSPSHSPSPISSPSPPPLSHVPPYHASAPHMLLALGTAYSPAPSDEHQYQQKSFNFSMMRSENASKKRYRTKFSKEQKEKMHGFSEKLGWRMQKGDDGLVQEFCNEIGVSRGVFKVWMHNNKNTLRKKPEDGIGNANAPQSNNDDGNANGGSGGFDSDINNPYNPNSNNNDNDIHMNEEDGCVNNVVHVSLNEMSS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0280 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 1 315 - -
Gso20g0280 358 MobiDBLite consensus disorder prediction 170 185 - -
Gso20g0280 358 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Gso20g0280 358 MobiDBLite consensus disorder prediction 146 186 - -
Gso20g0280 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 315 - -
Gso20g0280 358 MobiDBLite consensus disorder prediction 146 169 - -
Gso20g0280 358 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Gso20g0280 358 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 228 285 IPR006455 -
Gso20g0280 358 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Gso20g0280 358 Gene3D - 216 289 - -
Gso20g0280 358 MobiDBLite consensus disorder prediction 297 334 - -
Gso20g0280 358 MobiDBLite consensus disorder prediction 286 340 - -
Gso20g0280 358 SUPERFAMILY Homeodomain-like 219 289 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0280 Gso-Chr20 5247685 5249237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0280 62 287 ZF-HD Transcription Factor Family AT1G69600 49.145 9.15e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0280 ZF-HD_dimer 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0280 - - gmx:102660309 617.076