Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso20g0279 | ATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGTGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACCCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAA | 861 | 0.5377 | MSDHLVLFVDRLVRPVPMVQPLAQQPPEPVTPVDEAAAGPSGSSPAAEEDGDDGGEDAPLLQLAECRICQEEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEETTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTMNTHQQEQV* | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso20g0279 | 286 | CDD | RING_CH-C4HC3_MARCH | 66 | 112 | - | - | |
Gso20g0279 | 286 | Coils | Coil | 154 | 174 | - | - | |
Gso20g0279 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 120 | IPR013083 | - | |
Gso20g0279 | 286 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 58 | 118 | IPR011016 | GO:0008270 | |
Gso20g0279 | 286 | SMART | ringv_2 | 65 | 112 | IPR011016 | GO:0008270 | |
Gso20g0279 | 286 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 278 | IPR033275 | - | |
Gso20g0279 | 286 | SUPERFAMILY | RING/U-box | 65 | 116 | - | - | |
Gso20g0279 | 286 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 278 | - | - | |
Gso20g0279 | 286 | Pfam | Protein of unknown function (DUF3675) | 117 | 235 | IPR022143 | - | |
Gso20g0279 | 286 | MobiDBLite | consensus disorder prediction | 22 | 57 | - | - | |
Gso20g0279 | 286 | Pfam | RING-variant domain | 66 | 111 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso20g0279 | Gso-Chr20 | 5214465 | 5218017 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso20g0279 | 65 | 111 | C3H Transcription Factor Family | AT2G37950 | 48.000 | 1.01e-07 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso20g0279 | - | - | gmx:100817542 | 537.339 |