Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0279 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGTGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACCCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAA 861 0.5377 MSDHLVLFVDRLVRPVPMVQPLAQQPPEPVTPVDEAAAGPSGSSPAAEEDGDDGGEDAPLLQLAECRICQEEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEETTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTMNTHQQEQV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0279 286 CDD RING_CH-C4HC3_MARCH 66 112 - -
Gso20g0279 286 Coils Coil 154 174 - -
Gso20g0279 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 120 IPR013083 -
Gso20g0279 286 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Gso20g0279 286 SMART ringv_2 65 112 IPR011016 GO:0008270
Gso20g0279 286 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 278 IPR033275 -
Gso20g0279 286 SUPERFAMILY RING/U-box 65 116 - -
Gso20g0279 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 278 - -
Gso20g0279 286 Pfam Protein of unknown function (DUF3675) 117 235 IPR022143 -
Gso20g0279 286 MobiDBLite consensus disorder prediction 22 57 - -
Gso20g0279 286 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0279 Gso-Chr20 5214465 5218017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0279 65 111 C3H Transcription Factor Family AT2G37950 48.000 1.01e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0279 - - gmx:100817542 537.339