Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0271 ATGAACATGTTTCTCTTTCCTTCCTATGTGTTACTGCTTCTCTTCCTAATCCTAAACCTACCACACACCACTCACTCTGATGACATTGCCATTTATTGGGGTTCAAATGATGGTGAGGGTAGCTTAGCAGAAACATGTGCAACTGGTTTATATTCCTTTGTAAACATAGCATTCCTTGCACATTTTGGAAATGGTCAAGTCCCTCAAGTGATCCTTGGAAGGCACTGTGACCCTTTTGAGGGAAACTGTTCCGTACTTGGAAGGGACATCAGAAACTGCCAAAAGCAAGGAATCAAAGTGATGCTATCCATTGGAGGTCCAAGCATGAGTTACTCTCTTGTTTCCTCTGAGGATGCTAAGAGTGTTTCTGATTATTTATGGAACAATTTCTTAGGTGGTGGTGGTAACTCATCATCATCTTCAAGTCCACTAGGAGATGTTATATTAGATGGTATAGATTTTGGACTAGGGGGGTCCCTTATGACAAAACATTGGGAAGACCTTGCACATTATCTTAAGTCACATAGAAGAAATGTGTACTTAAGTGCAGCACCTCAATGCATTTTTCCTGATAGTGCACTTGGCAAAGCACTTGAGACTGGACTTTTTGACTATGTTTGGATACAATTCTACAACAATCCTCTATGTCAGTACAATGAAGGTAATGCTTCTAACCTTCTTAATGCATGGAAGCAATGGACAACTTCATTGAAATCAGGGAAAATGTTCTTGGGGTTGCCTGCTTCTCCAACAGCATCTATAGGCGGATATGTTCCTCCCGATTTGTTGATTTCTCGGATCCTGAGTACGGTGAAAACGTCTTCTAACTATGGAGGGATTATGCTTTGGTCAAGGCTTTTTGATAAAGAGAGTGGATATAGTAAAAGGATTTTGGAAAATAGTGTTTGCCTACAGAAAAGAGAAACTGAATGTGGAAGGCACAAGAATGGTTTTATTGAACATTTAGGCTACATGGCTAAAGAGGGTTTTGTAGCTTCTGAAAGCAAGAGCATTGACATGCAGTGTTGTGAGGTTATTTGCAGGAACAATTGTTCCTGTGAGGCTTATGCTCCTCTAAATTTTGTCAATAATACCGGATGCCAGTTTTGGGGTAAAGGAACAAAGTTTATTAAAGATTCTGGTGGAAATTTCAAACGAGTTTACTTTGTCAAACATAAAGTGAACAAGCTGTGGAAATGGATTGTCATTGGTGTTGGAGCAGCTGTTGCAGCACTTGTGTCCTGCTACTTATTCTATGTTTTGAGGAGAAAGTGCAAAGAAGAAGTGGACAGAAAAATGAAGCGAAAGGAACTGTTAGTTGAGGTTGGAGGTAATGCAATGGGAAATTATGGCAAAGCCAAAGGGTCTAAGAAAGAGGGAAAGACAATCAATGAGATTGAAGTATTCAGTTTGGAAAATATCATTGTTGCCACACACAATTTCTCCCCTGATAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTCTATAAGGGAACATTAATTGATGGACAAGAAATTGCAATAAAAAGACTTTCTAAAAGTTCAGGCCAAGGCCTAGTAGAGTTCAAGAATGAAGCTAAGATTATGGCCAAACTTCAGCACACTAATCTTGTGAGGCTTTTGGGGTTCTGCATCGACAGTGATGAAAGAATACTTGTATATGAATACATGTCTAACAAGAGCTTAGATCATTATTTATTCGATGCAAGTAGAAATAATGAGCTAGAATGGAATAAACGTCTTAAAATCATTGAAGGCACGGCTCAAGGACTTGTGTATTTGCACAGATATTCAAGACTAAAGGTGATACATAGGGATTTGAAGGCAAGCAATATATTGCTTGATGAAGAAATGAATCCAAGAATCTCTGACTTTGGCTTAGCTAGAATATTTGGATTGAAAGGATCTGAAGAAAACACCAGTAGAGTTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATCAATGGTGTTGTCTCAGTCAAAACAGATGTATACAGTTTTGGTGTGCTGCTACTTGAGATTATTAGTGGGATGAAGAACAATAGTTGCATCCACTCAAATCATCCATTCAATCTCATAGCACATGCCTGGCAGCTATGGAACCAAGGGAGAGCTCTAGAGCTGATGGATCCATCACTAAATGAATCATTCAGTTCTGATGAAGTAGAAAGATGCATTCAGATTGGACTCTTATGCGTACAAGATCATGCAATAGAAAGACCTACCATGGAAGATGTTGTTACTTTCCTATCAAATGATACCACCCAACTTGGTCAACCAAAGCAGCCAGCATTCTTCATGTATGTGGTTGCTGGAGAGTCAGGATGTCCTAATAATAGCAAACAAGAAAATTATTCACTAAATCATTTATCAATCTCCACTGCTTATGGGAGATAA 2403 0.3908 MNMFLFPSYVLLLLFLILNLPHTTHSDDIAIYWGSNDGEGSLAETCATGLYSFVNIAFLAHFGNGQVPQVILGRHCDPFEGNCSVLGRDIRNCQKQGIKVMLSIGGPSMSYSLVSSEDAKSVSDYLWNNFLGGGGNSSSSSSPLGDVILDGIDFGLGGSLMTKHWEDLAHYLKSHRRNVYLSAAPQCIFPDSALGKALETGLFDYVWIQFYNNPLCQYNEGNASNLLNAWKQWTTSLKSGKMFLGLPASPTASIGGYVPPDLLISRILSTVKTSSNYGGIMLWSRLFDKESGYSKRILENSVCLQKRETECGRHKNGFIEHLGYMAKEGFVASESKSIDMQCCEVICRNNCSCEAYAPLNFVNNTGCQFWGKGTKFIKDSGGNFKRVYFVKHKVNKLWKWIVIGVGAAVAALVSCYLFYVLRRKCKEEVDRKMKRKELLVEVGGNAMGNYGKAKGSKKEGKTINEIEVFSLENIIVATHNFSPDNKLGEGGFGPVYKGTLIDGQEIAIKRLSKSSGQGLVEFKNEAKIMAKLQHTNLVRLLGFCIDSDERILVYEYMSNKSLDHYLFDASRNNELEWNKRLKIIEGTAQGLVYLHRYSRLKVIHRDLKASNILLDEEMNPRISDFGLARIFGLKGSEENTSRVVGTYGYMSPEYAINGVVSVKTDVYSFGVLLLEIISGMKNNSCIHSNHPFNLIAHAWQLWNQGRALELMDPSLNESFSSDEVERCIQIGLLCVQDHAIERPTMEDVVTFLSNDTTQLGQPKQPAFFMYVVAGESGCPNNSKQENYSLNHLSISTAYGR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0271 800 Gene3D Glycosidases 27 300 - -
Gso20g0271 800 Gene3D Transferase(Phosphotransferase) domain 1 557 765 - -
Gso20g0271 800 PANTHER OS01G0783800 PROTEIN 184 768 - -
Gso20g0271 800 Pfam Protein tyrosine and serine/threonine kinase 484 751 IPR001245 GO:0004672|GO:0006468
Gso20g0271 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Gso20g0271 800 ProSiteProfiles Protein kinase domain profile. 481 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0271 800 Gene3D Phosphorylase Kinase; domain 1 455 556 - -
Gso20g0271 800 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 304 IPR001223 GO:0005975
Gso20g0271 800 CDD STKc_IRAK 487 752 - -
Gso20g0271 800 Pfam Glycosyl hydrolases family 18 29 284 IPR001223 GO:0005975
Gso20g0271 800 Pfam PAN-like domain 332 371 IPR003609 -
Gso20g0271 800 CDD GH18_hevamine_XipI_class_III 28 297 IPR045321 -
Gso20g0271 800 SMART serkin_6 481 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0271 800 SUPERFAMILY Protein kinase-like (PK-like) 464 771 IPR011009 -
Gso20g0271 800 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 184 768 - -
Gso20g0271 800 SUPERFAMILY (Trans)glycosidases 24 296 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0271 Gso-Chr20 4911778 4916051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0271 446 789 Receptor kinase-like Gene Family AT4G23150 52.616 1.11e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g0271 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0271 - - gmx:100809337 1610.51