Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0270 ATGGATCTGCAAAATGTGCAAAACCAAAGCATGATGCGTTTGGTTCTGTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGGTTCACTGAGGCTATTAATCAGCTTGGAGGTGCAGAAAAGGCAACTCCTAAGAGTCTGATGAGAGTGATGGGGATTCCAGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCAACCACTAGAAACCTGTTCTGACAACAAGCAAGAAGGTTACAGTGAAATCCAGAACAGTGATGGTCATTGCAGCAAGGAAATCAGCATTGGGACCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAAAGAAAACTCTATGAACAAATTGAGGTACAAAAACATTTGCAGCTTAGGATTGAAGCTCAAGGGAAGTACTTACAATCAGTGCTAACAAAGGCACATGAAGCACTTGCAAGACACAGTTCTTCCACAACTGGTGTAGAACTTGCAAAATTTGAACTTTCTCTGTTAGTGTCAATAATCAATAATGCATGTCCAAGCTCTCCAATTTCAGAACTCACAGAAACACGAGGGTTAAGTTTGAACTGTGGAGAGAGGAAACAAGACAGAGGAACCATGTGTTCACTTGAAAGCTCTTTGACATCATCTGAAAGCTCTGAACAACAACACATCATGGATGAGGCAGAAAACCCTCAAAAGTTTGATGGTGTTTCAGTTGAATTGCCGTTGATGTCCATTCATCCAGCAGAAGTTAAAGCATTCAAGGGAGATACAAGTGTTGATGGGAGAAAGAGAAGTGCAGAAACTGATTCTGATCATTGTGTTGATCAACCTTGTGGCAACAAGAAGTTGAGGAAATCTGAAGTGTCACAAATGCTTGACTTGAACAGCCAATACCAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTTCAGTTCAAGCTTTTAG 1005 0.4149 MDLQNVQNQSMMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQPLETCSDNKQEGYSEIQNSDGHCSKEISIGTQNQMTESLKIAEALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLTKAHEALARHSSSTTGVELAKFELSLLVSIINNACPSSPISELTETRGLSLNCGERKQDRGTMCSLESSLTSSESSEQQHIMDEAENPQKFDGVSVELPLMSIHPAEVKAFKGDTSVDGRKRSAETDSDHCVDQPCGNKKLRKSEVSQMLDLNSQYQRDIDSSVKEIDLNFSSSF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0270 334 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Gso20g0270 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Gso20g0270 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 334 IPR044848 GO:0003700
Gso20g0270 334 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 334 - -
Gso20g0270 334 Gene3D - 20 78 - -
Gso20g0270 334 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Gso20g0270 334 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Gso20g0270 334 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0270 Gso-Chr20 4878844 4880820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0270 12 331 G2-like Transcription Factor Family AT1G69580 48.358 5.36e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso20g0270 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0270 - - gmx:100805252 647.891