Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0265 ATGAAGGCATGGCCAGCTAGGGTGATATACCCTTCTTCACAAGAGAACACAAATAGCCTCACTAGATACCCTTCTTCTTCCTCCCACTCTTCTTCTCCTCCTTCAATGGGAATGGTCTATGCCGACATGGACTCTCTCTCTCTTTGTTCCCACTACGGTACTGTGGTTTCTTCTCATCACCAAGATTGCTATGTCTCCAACGGGGGCACAAACTGGGGTTTTCCCTTCATGAGGGAATGCCCCAACAACAGTGATGATGTTGCTGAAGAAGAAGAGGGTAAAGGCTCTGATAGCAGTACTGGTGAAGACAGTGACAAAGTTAACCACCATGCTAATAACTCTAACGATGAGAACAACCCTAATGAGAATAATTCTAATAGTGGCGGTTCGGGGCATTCCAAGCTTTGTGCTAGAGGGCATTGGAGACCAGCAGAAGATTCCAAACTCAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAACCTCATTGCTGAGAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGTTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGGGCATTCAGTGAAGAAGAAGAAGAGAGGCTGATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCAGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGAAGAAGGCTGAGCCAATCTTCTTCTGTTTACAGAAGAGTGGATGAAATTAACACAACAATAACAACGACAAACAGCATTGTTGTCTCCAGAGACACAGAACAACAAGCACCACCACCACCACCCTATTGTGTCAATCTCTCAAATAATGGAGGACTTGCCAACAACATCATCAACAACAACAACAACATTAACATGATGTCTAGTTTTCCATATGCTGCTGCATCCTTCCATGGAGTAGTGCCTTCTTCTGGTGGGATTGAATTTGGCTTAAATTCCTCACCCCACATGACTACAGCCAAAGAACCATTCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACATCACTTGATTTCTTTTCAGGTGTTAGAAGCAGCAGTGACATGGTGGGAGAGTATTTTGGCCAGAACCTTCATCACCAACAACAACAACCTTCATCTGGTTTCTACCCTCAATACCCCCAATATGTGATGCTAATGAATCACCGCCACCAACAAAACAATCACAACAACTTTTACGGTTTCTCAAATTCCACATCACAGATTTTATTAGGCCACAGTGAAGCCTCACTATCATCATCAGTGGCAGCAGAAGAACACAGAGATCATCAAAACTTGAGCAGTGATCAGTGCCCCCCAGATGCAACAACAACAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACTTGA 1458 0.4465 MKAWPARVIYPSSQENTNSLTRYPSSSSHSSSPPSMGMVYADMDSLSLCSHYGTVVSSHHQDCYVSNGGTNWGFPFMRECPNNSDDVAEEEEGKGSDSSTGEDSDKVNHHANNSNDENNPNENNSNSGGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSSSVYRRVDEINTTITTTNSIVVSRDTEQQAPPPPPYCVNLSNNGGLANNIINNNNNINMMSSFPYAAASFHGVVPSSGGIEFGLNSSPHMTTAKEPFSTTKLAPPHIALYPQQTSLDFFSGVRSSSDMVGEYFGQNLHHQQQQPSSGFYPQYPQYVMLMNHRHQQNNHNNFYGFSNSTSQILLGHSEASLSSSVAAEEHRDHQNLSSDQCPPDATTTIPPPFIDFLGVGAT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0265 485 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Gso20g0265 485 SMART sant 137 186 IPR001005 -
Gso20g0265 485 SMART sant 189 237 IPR001005 -
Gso20g0265 485 MobiDBLite consensus disorder prediction 113 132 - -
Gso20g0265 485 Gene3D - 192 261 - -
Gso20g0265 485 Pfam Myb-like DNA-binding domain 138 184 IPR001005 -
Gso20g0265 485 Pfam Myb-like DNA-binding domain 190 233 IPR001005 -
Gso20g0265 485 PANTHER MYB TRANSCRIPTION FACTOR 36 485 - -
Gso20g0265 485 MobiDBLite consensus disorder prediction 446 475 - -
Gso20g0265 485 ProSiteProfiles Myb-like domain profile. 138 184 IPR001005 -
Gso20g0265 485 Gene3D - 138 189 - -
Gso20g0265 485 MobiDBLite consensus disorder prediction 10 35 - -
Gso20g0265 485 MobiDBLite consensus disorder prediction 10 36 - -
Gso20g0265 485 MobiDBLite consensus disorder prediction 83 112 - -
Gso20g0265 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 239 IPR017930 -
Gso20g0265 485 SUPERFAMILY Homeodomain-like 138 231 IPR009057 -
Gso20g0265 485 CDD SANT 141 182 IPR001005 -
Gso20g0265 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 184 IPR017930 -
Gso20g0265 485 PANTHER MYB PROTEIN-RELATED 36 485 - -
Gso20g0265 485 CDD SANT 192 232 IPR001005 -
Gso20g0265 485 MobiDBLite consensus disorder prediction 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0265 Gso-Chr20 4723071 4725661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0265 30 250 MYB Transcription Factor Family AT1G69560 53.942 1.02e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0265 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0265 K09422 - gmx:100804537 886.715