Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0256 ATGGAGGGTGGCACAACAAGCTCTGAACTCCCCCCTGGCTTTAGGTTTCATCCAACGGATGAGGAACTGATTGTGTATTACCTTTGTAACCAAGCCACCTCAAAGCCATGCCCTGCATCTATCATCCCAGAAGTGGATCTCTATAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTACTCCAAGAGACAGGAAGTACCCAAATGGGGTGAGGCCTAACCGAGCAACCGTGTCAGGGTATTGGAAGGCTACTGGCACAGACAAGGCAATCTACAGTGGATCTAAGCATGTAGGGGTGAAGAAATCTTTAGTCTTTTACAAGGGTAGGCCACCAAAGGGTGCCAAGACAGATTGGATCATGCATGAGTATCGATTGGCTGAATCAAAAATACCATCAAGCAGGAAAATTGGATCCATGAGGCTGGATGACTGGGTCTTGTGCAGGATCTATAAGAAGAAGAGCATGGTAAAGGCATTGGAGCACAAAGAGGCACAGCCTAAAGTCCAAATTGCTAATCTTGCAGCTGCAAATCAAGATGTTGAACAGAAAATGATGAACCTTCCTAGGACTTGGTCCCTTGCTTACCTTTTGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCTCTTATTGCCCAACCTTAGATTTTCAAATTAACAATGCCAATATTGAATTTGACCCTTTTGTGAAATCTCAACCGGTTGAAATGAACTACAATTATGAAGCAGATTCAGGGAAGTACCAAGTGAAACAGAGTAGCACCATTGACCAACCCATATATGTGAAACAAATGTATGATTTGCTAGGATAA 843 0.4235 MEGGTTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHVGVKKSLVFYKGRPPKGAKTDWIMHEYRLAESKIPSSRKIGSMRLDDWVLCRIYKKKSMVKALEHKEAQPKVQIANLAAANQDVEQKMMNLPRTWSLAYLLDMNYLGPILSDGSYCPTLDFQINNANIEFDPFVKSQPVEMNYNYEADSGKYQVKQSSTIDQPIYVKQMYDLLG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0256 280 ProSiteProfiles NAC domain profile. 10 162 IPR003441 GO:0003677|GO:0006355
Gso20g0256 280 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Gso20g0256 280 SUPERFAMILY NAC domain 7 162 IPR036093 GO:0003677|GO:0006355
Gso20g0256 280 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Gso20g0256 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 4 231 - -
Gso20g0256 280 PANTHER NAC TRANSCRIPTION FACTOR 56 4 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0256 Gso-Chr20 4502949 4504968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0256 5 215 NAC Transcription Factor Family AT1G69490 68.610 1.89e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso20g0256 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0256 - - gmx:100785110 587.415