Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0251 ATGGGTAGGTCACCATGCTGTGAAAAAGTAGGCTTGAAGAAAGGGCCTTGGACTCCAGAGGAAGACCAAAAGCTCATGGCTTACATTGAAGAGTTTGGCCACGGAAGCTGGCGTGCTTTGCCTGCCAAAGCTGGACTTCAAAGATGTGGGAAGAGCTGCAGGCTAAGGTGGACTAACTACCTGAGACCAGACATAAAAAGAGGAAAGTTCAGCTTGCAGGAGGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCCATAGCAGCTCAACTTCCCAAGAGAACCGACAATGAAATAAAGAACTATTGGAACACACACCTGAAGAAGAGGCTAACCAGAATGGGGATAGACCCCACCACCCACAAGCCGAAAACCGACGCACTCGGCGGCGCCGGTGGCGGCCAAACTAGAGACGCGGCCAACCTCAGCCACATGGCTCAGTGGGAGAGCGCGAGGCTCGAAGCCGAAGCGAGATTGGTTAGAGAATCAAAGTTGCAAGTCCAGAACAACCTCGGCTCCAACAACACCCAACCTGCGAGACTTGTTCTCAACAAAATCACAACACAACAACAACCCTCGCTGCCACCGTGCCTCGATATTCTCAAAGCATGGCAAAGCTCATGGAACAAACCGCCACAACCATCAACAACAAAAGAAAACAACACCAAGATAATGCATAGCATGTATGCAATGATGCTTTCCACTGATGACACTCTAGAGTCTCCAACATCTACATTGTGTTTCCCAGGAACAACAACAACAACAATGCTTCCTGTTTCCAACAACCACAACAACAACAACATTGGAGTACTGTTCAATGAAAACAACAGCAACATGTATTCTCTCGCGACAAACATCGATGATGGCGTGTTCATGAAAGACAACACCGCCACAATGTTGCATTTGCAAATGCAAGACGATGATATCATGGCGGCGGTGGAAGCATTCAGAACGTACGACGACAACAGCAGCAACAAATACAATAATAATAATAATAATAATATTGTTGTTGTCCCTCCCTTACTCTCCAACAGTGTCGTCCTCGAAGGATTCAACAATGAAAGTAATGATAATAATAACGTTGCTTCGTTGGTGGTTTATGACTCCAACGATAACTTGAGCACGGAAGAAGCAGAGAACCTGGCAATCATCAACGGGGACGGAAGCCTCTGCAACGTGAAGAACCTCGATGAGAATAATAAGCATTACTGGAATAACATATTCAATTTGGTGAATGATCCCTTGTCTGGTTCCTCTGTCTTCTGA 1281 0.4637 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGAGGGQTRDAANLSHMAQWESARLEAEARLVRESKLQVQNNLGSNNTQPARLVLNKITTQQQPSLPPCLDILKAWQSSWNKPPQPSTTKENNTKIMHSMYAMMLSTDDTLESPTSTLCFPGTTTTTMLPVSNNHNNNNIGVLFNENNSNMYSLATNIDDGVFMKDNTATMLHLQMQDDDIMAAVEAFRTYDDNSSNKYNNNNNNNIVVVPPLLSNSVVLEGFNNESNDNNNVASLVVYDSNDNLSTEEAENLAIINGDGSLCNVKNLDENNKHYWNNIFNLVNDPLSGSSVF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0251 426 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso20g0251 426 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso20g0251 426 CDD SANT 69 112 IPR001005 -
Gso20g0251 426 CDD SANT 16 61 IPR001005 -
Gso20g0251 426 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso20g0251 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso20g0251 426 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 419 - -
Gso20g0251 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso20g0251 426 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso20g0251 426 SMART sant 66 114 IPR001005 -
Gso20g0251 426 SMART sant 13 63 IPR001005 -
Gso20g0251 426 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso20g0251 426 Gene3D - 13 66 - -
Gso20g0251 426 Gene3D - 69 116 - -
Gso20g0251 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 419 - -
Gso20g0251 426 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0251 Gso-Chr20 4310669 4313329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0251 1 253 MYB Transcription Factor Family AT3G01140 64.567 3.21e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0251 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0251 K09422 - gmx:100799222 824.313