Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0248 ATGCAAAACAAACCCATTGTCGCAATAAGGCCAACAACAAGTGGATCATCAGGAGAACAACCAGATGATGAGGAAGTGGAGGGAGAGATTAATAAGACTAAAAACATGACACTTGTTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCAGACAGATGCTCAAGAAGGAGAAAGCAGACTCATTTAACTGAGCTGGGGACACAGGTCTCCCAATTACGAAGTGAAAATTCTTCGTTGTTAAAGCGATTCATTGATGTGAGCCCGAAATACAATAATGTTGCAATTGATAATAGAGTACTGAAAGTTGATGTTGAAACATTAAGAGTAAAGGATTCTGTCAAAACTGCAAGCACAGAGATTTCTAGTGAAGTAATCATTGAGACATTTCATAATGATGATGAAGCATTGGCCGCTTCGGACGACAAGGTTGTGGACAAAACTATCTAA 456 0.3925 MQNKPIVAIRPTTSGSSGEQPDDEEVEGEINKTKNMTLVDAKRVRRMLSNRESDRCSRRRKQTHLTELGTQVSQLRSENSSLLKRFIDVSPKYNNVAIDNRVLKVDVETLRVKDSVKTASTEISSEVIIETFHNDDEALAASDDKVVDKTI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0248 151 Pfam bZIP transcription factor 41 85 IPR004827 GO:0003700|GO:0006355
Gso20g0248 151 MobiDBLite consensus disorder prediction 1 19 - -
Gso20g0248 151 CDD bZIP_plant_GBF1 43 94 IPR045314 GO:0003700|GO:0006355
Gso20g0248 151 PANTHER BASIC LEUCINE ZIPPER 63 1 122 - -
Gso20g0248 151 PANTHER BASIC LEUCINE ZIPPER 63 1 122 - -
Gso20g0248 151 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 40 85 IPR004827 GO:0003700|GO:0006355
Gso20g0248 151 SUPERFAMILY Leucine zipper domain 42 86 IPR046347 GO:0003700|GO:0006355
Gso20g0248 151 MobiDBLite consensus disorder prediction 49 74 - -
Gso20g0248 151 MobiDBLite consensus disorder prediction 1 32 - -
Gso20g0248 151 Gene3D - 41 93 - -
Gso20g0248 151 MobiDBLite consensus disorder prediction 49 65 - -
Gso20g0248 151 SMART brlzneu 38 102 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0248 Gso-Chr20 4270229 4274654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0248 3 113 bZIP Transcription Factor Family AT5G24800 52.174 4.46e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso20g0248 bZIP_1 1.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0248 K25784 - gmx:106797589 287.345