Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0242 ATGGCTAGTGTCTTTTCTGCATGTTCAGGTTCTGCTGTTCTTTTCTACAGCAGAAACTCCTTTCCCTCAAAAGGATCTTTCATTCACCTCAAAAGGCCTCTCTCTGCCAACTGTGTAGCTTCTTTGGGGACTGAGGTATCAGTGTCTCCAGCAGTAGACACTTTCTGGCAGTGGCTTAAAGAAGAGGGTGTTGTCTCTGCCAAGACCCCAGTGAAGCCTAGTGTGGTGCCAGAAGGCCTAGGATTGGTTGCACTCAAAGACATTTCTAGGAATGAGGTTGTCTTGCAGGTTCCTAAGAGGCTGTGGATTAACCCTGATGCTGTGGCTGCTTCAGAGATTGGGAAGGTGTGCATTGGATTGAAGCCTTGGTTGGCTGTTGCATTGTTTCTGATAAGAGAGAGGTCAAGGAGTAATTCTCTTTGGAAGCATTACTTCAGCGTTCTGCCTAAGGAAACTGACTCTACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTACAAGGGACTCAACTTCTGAACACAACTAGGAGTGTGAAACAATATGTGGAGAATGAATATAGGAGATTGGAGGAAGAAATTATACTCCCTAACAAGAAGCTTTTCCCTTCTCCTCTTACACTTGATGACTTCTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCCCGCCTTCGCAACGAAAATCTAGTTGTGATTCCATTTGCTGACTTCATAAATCATAGTGCCAGAGTAACAACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGTCTTTTCTCCTGGGACTACCTATTTTCCCTTAGGAGCCCTCTTTCTCTCAAGGCTGGGGATCAGGTATATATCCAATATGATTTGAATAAAAGCAATGCCGAGTTGGCTCTGGACTACGGTTTCATCGAACCAAATGCAGATCGGAACGCATACACCTTGACACTGCAGATATCTGAGTCAGACCCTTTTTTTGGTGACAAACTTGATATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTTCTACAGCCGCCCTCTTCCACCAGGGTTGCTTCCATATCTGAGACTGGTAGCTCTAGGGGGCACTGATGCATTCCTGTTGGAGTCAATATTTAGAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGCCGCGACAATGAGGAGCTAATATGCAGAGTGGTTAGAGAGACCTGCAAAACTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGAAGCAAAGCTAGATTCAAGGCATGCAATAGCAGTTGGAATTCGAGAAGGGGAGAAGCAGCTCCTGCAGCAAATTGATGAGACCTTCAAGGAGAAAGAATTGGAATTGGACCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGTGGGGAAAATGGTGATATCCTTGGAGACCTTGGAAAATTCTTCTAG 1464 0.4447 MASVFSACSGSAVLFYSRNSFPSKGSFIHLKRPLSANCVASLGTEVSVSPAVDTFWQWLKEEGVVSAKTPVKPSVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCIGLKPWLAVALFLIRERSRSNSLWKHYFSVLPKETDSTIYWSEEELSELQGTQLLNTTRSVKQYVENEYRRLEEEIILPNKKLFPSPLTLDDFFWAFGILRSRAFSRLRNENLVVIPFADFINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFGDKLDIAESNGFGETAYFDIFYSRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVVRETCKTALAGYHTTIEEDQKLKEAKLDSRHAIAVGIREGEKQLLQQIDETFKEKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0242 487 PIRSF RMT_SET 1 486 IPR011192 GO:0009507|GO:0030785
Gso20g0242 487 Gene3D - 302 466 IPR036464 -
Gso20g0242 487 ProSiteProfiles SET domain profile. 62 286 IPR001214 GO:0005515
Gso20g0242 487 Pfam Rubisco LSMT substrate-binding 318 442 IPR015353 -
Gso20g0242 487 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 20 485 IPR011192 GO:0009507|GO:0030785
Gso20g0242 487 Gene3D set domain protein methyltransferase, domain 1 47 301 - -
Gso20g0242 487 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 34 478 - -
Gso20g0242 487 Pfam SET domain 79 285 IPR001214 GO:0005515
Gso20g0242 487 SUPERFAMILY SET domain 49 306 IPR046341 -
Gso20g0242 487 Coils Coil 172 192 - -
Gso20g0242 487 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 478 - -
Gso20g0242 487 CDD SET_RBCMT 63 301 IPR044431 GO:0016279|GO:0018022
Gso20g0242 487 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 309 480 IPR036464 -
Gso20g0242 487 SMART set_7 67 292 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0242 Gso-Chr20 3877245 3881189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0242 46 241 NAC Transcription Factor Family AT3G56570 24.631 8.95e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso20g0242 SET 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0242 K00592 - gmx:100801721 953.355