Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0236 ATGGCAAACAAGAGAAAAAGATGGGAAGGTCAAGGAGATCAAGGAAACAGTGAAGAAGGGAACATTGAATTGGAGCAACTAAGGGAAGAAGCAGCATCAATGGCTGCTGATATACTCGTTGCTAGAAGAGCTAAGAAACGTTACATTGGTGTACGCCAAAGACCCTCAGGGAGATGGGTGTCTGAAATCAAAGACACCATACAGAACATTAGGTTATGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGGGCTTATGATGAGGCCGCGCGCTTGCTTCGTGGCGCCAACACTCGCACGAACTTCTTTTCTTCACAATCTTCTCCTAATTCTGTTCCTGCTCTTCCTCTAAAGATTGCCAAACTTCTCCTTCTTAGGCTCAAAGCTAGAAACATGGCCTCTTCATGTGTGGTTACCCCTTTTCCTAGTAACCACTATGAACCCGAACCCGAGTCACATTTTTATCATCAAATAGAAGAATCCTATTATGGGAATTCTTTAGATATGGTAGGAAATGGGATTGTTGAACAAAATTATTATTGTGCTAGTTATAGTTCTTCTGCCATAATAACTACTTGTGACTTTAGTTGTGGTACTAATGAAGAAAATTCTAACCTAGAGGGTAGTAGTAGGGAGGATTCAAGATTAGGGTATCATTGTGATGACAATGTTTATGATCAAAACAACCAGATTGTGAGTGGTAAAGAGTTTGAAGACTGTGATGCTGGGATTAGAGATCTTCAGTTTTTGGACACTGCTGGATCATTGAGTTGCTTTTTTTCTCCTTTTGAGATAGCAGAAGAGATGGTGGGATCAATAGAGGAAGAAGAGAAATATCGTGTTGATGATTCACCATTAGGTAGAGAATCTTTCAGGATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCCTAATTGGGGTGTCTGAGTGTTTGAGCCTACAAGTTGGACCAGGAAATGGAAAGGAATTGGAAAAAAAAATTGAGGATGGAAAATAG 1005 0.404 MANKRKRWEGQGDQGNSEEGNIELEQLREEAASMAADILVARRAKKRYIGVRQRPSGRWVSEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFSSQSSPNSVPALPLKIAKLLLLRLKARNMASSCVVTPFPSNHYEPEPESHFYHQIEESYYGNSLDMVGNGIVEQNYYCASYSSSAIITTCDFSCGTNEENSNLEGSSREDSRLGYHCDDNVYDQNNQIVSGKEFEDCDAGIRDLQFLDTAGSLSCFFSPFEIAEEMVGSIEEEEKYRVDDSPLGRESFRMKYERKFSACLYTLIGVSECLSLQVGPGNGKELEKKIEDGK* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0236 334 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g0236 334 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Gso20g0236 334 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 331 - -
Gso20g0236 334 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 331 - -
Gso20g0236 334 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Gso20g0236 334 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Gso20g0236 334 Coils Coil 17 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0236 Gso-Chr20 3756741 3757745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0236 45 124 AP2-EREBP Transcription Factor Family AT5G19790 66.250 4.79e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso20g0236 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0236 K09286 - gmx:100793940 629.787