Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0218 ATGGTTGACGGCGGAAAAGGAGAGGGAGGAGGAGAGCAAGCATCGCCACCCTCGACGGCGGCGCGTCACGGAACCACTCTCCGGCCACGCGCCTCCGTGGAGAGTGTTTTCAGCGGCGGGTATAGCCCCGGTCCCATGGCTCTGCTTTCCAATTTCTACGGCGACGGCGATGAGTGCAAGTCGTTCTCGGAGCTCCTCGCCGGCGCCATGGTGGACCCCACGGCACCCTCGCCCATGCCCACCACAACGTTCACGCTTCCACCTGGATTCATCGATTCACCTTCTCAAGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAGCTGTGCAAACCCACTCTGAACATCCATTCTCTATATCAGCCGTATCTGCTACCTCATCATGTGCTGCACAACAGCTGATTCCACCCTCAATGCCAGATTCTAAGGTGAAAGAATCCCTTGATTATTCTCACTCTGAACAAAAATTGCAGTCTTCTGTGAATGTTGATAATAAGCCTAATAATGATGGTTACAACTGGAGGAAGTATGGGCAAAAACATGTGAAAGGTAGTGACTTCTCAAGAAGTTATTATAAGTGCACACGTCCAAATTGTCCTGTGAAGAAAAAACTTGAGCGTTCTCTTGAGGGTCATGTGACTGCAATTATTTATAAAGGAGAACACAATCATCAACGTCCTCATCGCAGTAAGATTGTGAAAGAAACACAAACTTCAAATGAAAATTCAGTGTCTAAGATGGATCTAGGGTCTAGTCAGGCCACAGGTGAACATGGATCAGGAACAAGTGATAGTGAGGAAGTAGATGACCATGAAACTGAAGCAGATGAGAAAAATGATGAACCTGATGCCAAGAGAAGAAACACAGAAGCCAGGATCCAGGATCCAGCCACTTTGCATAGATCTGTTGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGAATCTCTTAGATGATGGATATCGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACGACCCAAGGTTGCAAAGTTCGGAAGCATGTTGAGAGGGCTTCAATGGATCCTAAAGCTGTCATAACAACATACGAAGGAAAACACAATCATGATGTGCCTGCAGCTAAGACTAATAGCCACACACTTGCCAACAATAGTGCATCCCAGCTAAAAGCACAAAAGTTTGCCATACCCGACGTGAAACATAGTTCCAGCAGCAGGGGTGTTACGGGCAATGAGCAGCGACCTGTGGCAAGTCTAAGATTGAAGGAAGAGCAGATCACATAG 1320 0.4712 MVDGGKGEGGGEQASPPSTAARHGTTLRPRASVESVFSGGYSPGPMALLSNFYGDGDECKSFSELLAGAMVDPTAPSPMPTTTFTLPPGFIDSPSQGQFGITHQQMLAQISSQAVQTHSEHPFSISAVSATSSCAAQQLIPPSMPDSKVKESLDYSHSEQKLQSSVNVDNKPNNDGYNWRKYGQKHVKGSDFSRSYYKCTRPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHRSKIVKETQTSNENSVSKMDLGSSQATGEHGSGTSDSEEVDDHETEADEKNDEPDAKRRNTEARIQDPATLHRSVAEPRIIVQTTSEVNLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCKVRKHVERASMDPKAVITTYEGKHNHDVPAAKTNSHTLANNSASQLKAQKFAIPDVKHSSSSRGVTGNEQRPVASLRLKEEQIT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0218 439 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 438 IPR044810 GO:0003700
Gso20g0218 439 MobiDBLite consensus disorder prediction 409 439 - -
Gso20g0218 439 SMART WRKY_cls 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 SMART WRKY_cls 324 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 MobiDBLite consensus disorder prediction 223 240 - -
Gso20g0218 439 MobiDBLite consensus disorder prediction 223 304 - -
Gso20g0218 439 ProSiteProfiles WRKY domain profile. 319 384 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 MobiDBLite consensus disorder prediction 139 177 - -
Gso20g0218 439 MobiDBLite consensus disorder prediction 410 424 - -
Gso20g0218 439 MobiDBLite consensus disorder prediction 241 266 - -
Gso20g0218 439 ProSiteProfiles WRKY domain profile. 168 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 Pfam WRKY DNA -binding domain 325 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 Pfam WRKY DNA -binding domain 174 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 MobiDBLite consensus disorder prediction 1 36 - -
Gso20g0218 439 MobiDBLite consensus disorder prediction 158 174 - -
Gso20g0218 439 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 19 438 - -
Gso20g0218 439 SUPERFAMILY WRKY DNA-binding domain 169 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 MobiDBLite consensus disorder prediction 283 299 - -
Gso20g0218 439 Gene3D WRKY domain 309 385 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 Gene3D WRKY domain 158 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso20g0218 439 SUPERFAMILY WRKY DNA-binding domain 316 384 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0218 Gso-Chr20 3236819 3241494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0218 20 439 WRKY Transcription Factor Family AT2G03340 48.069 1.23e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso20g0218 WRKY 2.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0218 - - gmx:100784936 887.486