Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0208 ATGGAGGAGAGGAAGAAGTATGTGTGCAAGTATTGCAGCAAGAGCTTTCCTTGTGGGAAGTCTCTTGGGGGTCACATCAGGACCCATATGATGACTGAAGAAAGAAACAACAACAACAATGTTAATGTTGTTGTTGATGGTGCTGATGACAAGGACAACATCAACAGGTTCATCAAGTTGGGTGGTACTGTGATGAGGAATAATAATAACAAGAAGAGAGATTTATCATGGTGTGAAGATAGCAATAACAATCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTTCTGGTGGTGCTGCCAATGCCAACAACAATGAACAACAACAACAGAATAAAGAGGATAAGAGATTCTGCAAAGAATGTGGGAAAGGTTTTCCATCACTGAAGGCTCTCTGTGGCCACATGGCTTGTCACTCAGAGAAAGAGAAGAGAACAACAGCAACAACAACCATCAAGTTTGAAGAGAAATTGGTTAGGGATAGTCATTCTGACACTGAGACTTCAACTCATCCAAGGAGATCCAAGAGAATGAGGGTGAAGAAGACCATTAAACTTTCCAATCACAACAACCCTTTTTCTTTTTCTTCTTCTCCTTCTTCTTCTGGTGTTGTTCCTTTGGTCAATAATGGTTCTTCACCTGTGTCCGAGGTGGAGCAGGAGGAACAAGAAGAGGTGGCAAGGTGCTTGATGCTGTTGTCTAGAGATTCTGGCAGCTTCAACTTCAAGAGTGGTCGTTTTGCTTCTGTTACTGAATTTTCTGATAACAATTCGGTTATTCTAGAAGCAAAATCATCCTCTCCTGATACCCTGATTGGTGTCATCAGCTATGGTAATAACAACAACAACAACAACTTTGTCTCTAATAATAATCATGCTTATGATCTTGTGGAGAAGAAGTTGCTTAAGGTTAAGAATATCAAGTTTAAGTCGGTTGAGTTTGGTGCTTCTGATAATTATTCAGGTGCTAGAGTTTTCAGATATGGTCCAAAAACCAAAATGGTAGACTCAGATTTCTCAAATGATGAACTCAAGCGGTCAAAGTTGGGGGACAAGTCAAGCAAGTACACTGCATCTGTAGTGAAGAAATTGGTGATGGAGGATTTGGATTATGATAGAACATATGGAGGAACTACAAGGAAGTTTGATTCAAGAAAGAGGGGCAACTATGATTTAGTTGGTGTTTCTAGCAAGAATGGAACAAAAGGGTGGAAGTATGAGTGTTTTGAAGGTGAAAGGGACAATAATAGTTCTTATGAATACTCAATAGATGATGAGAGTGATGAAAACAGTTCAGAGACTGAATCTTTTCCTGCTCCAGGGTCTCATCGTAAGAGTAAGGCTCTCAATGGAAAGAAGTGCACCACAAATGCCAAGAAGAAGAAGTTGAAGCCTTCTAAGAAAAGCAAGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGGGGTCACAAAAGATCACATTTCATTGGAGGTTCTGAAGAAAACACTGTTCTGATCAAACAAGTTGTTCCTAATTTCCTTATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1596 0.401 MEERKKYVCKYCSKSFPCGKSLGGHIRTHMMTEERNNNNNVNVVVDGADDKDNINRFIKLGGTVMRNNNNKKRDLSWCEDSNNNPIYGLRENPKKTMRFVHSSGGAANANNNEQQQQNKEDKRFCKECGKGFPSLKALCGHMACHSEKEKRTTATTTIKFEEKLVRDSHSDTETSTHPRRSKRMRVKKTIKLSNHNNPFSFSSSPSSSGVVPLVNNGSSPVSEVEQEEQEEVARCLMLLSRDSGSFNFKSGRFASVTEFSDNNSVILEAKSSSPDTLIGVISYGNNNNNNNFVSNNNHAYDLVEKKLLKVKNIKFKSVEFGASDNYSGARVFRYGPKTKMVDSDFSNDELKRSKLGDKSSKYTASVVKKLVMEDLDYDRTYGGTTRKFDSRKRGNYDLVGVSSKNGTKGWKYECFEGERDNNSSYEYSIDDESDENSSETESFPAPGSHRKSKALNGKKCTTNAKKKKLKPSKKSKDHECPICYKIFKSGQALGGHKRSHFIGGSEENTVLIKQVVPNFLIDLNLPAPVDE* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0208 531 SMART c2h2final6 7 29 IPR013087 -
Gso20g0208 531 SMART c2h2final6 478 500 IPR013087 -
Gso20g0208 531 SMART c2h2final6 123 145 IPR013087 -
Gso20g0208 531 MobiDBLite consensus disorder prediction 194 223 - -
Gso20g0208 531 MobiDBLite consensus disorder prediction 165 179 - -
Gso20g0208 531 MobiDBLite consensus disorder prediction 165 184 - -
Gso20g0208 531 Gene3D Classic Zinc Finger 1 54 - -
Gso20g0208 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Gso20g0208 531 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 531 - -
Gso20g0208 531 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Gso20g0208 531 ProSitePatterns Zinc finger C2H2 type domain signature. 480 500 IPR013087 -
Gso20g0208 531 SUPERFAMILY beta-beta-alpha zinc fingers 5 145 IPR036236 -
Gso20g0208 531 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 531 - -
Gso20g0208 531 MobiDBLite consensus disorder prediction 452 473 - -
Gso20g0208 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Gso20g0208 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 478 500 IPR013087 -
Gso20g0208 531 MobiDBLite consensus disorder prediction 423 476 - -
Gso20g0208 531 Pfam C2H2-type zinc finger 125 147 - -
Gso20g0208 531 Pfam C2H2-type zinc finger 7 30 - -
Gso20g0208 531 Pfam C2H2-type zinc finger 478 500 - -
Gso20g0208 531 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0208 Gso-Chr20 2960692 2963060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0208 5 531 C2H2 Transcription Factor Family AT1G26610 39.312 1.32e-76 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0208 zf-C2H2_6 7.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0208 - - gmx:100817538 927.546