Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0205 ATGCCCTTTGAAGAAGATGACAAGGATCCTAACATTTGGTTTCTTGACCATAATTACCATGAATCGATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGTTGCGTGAAAATGACTTTGACACTCATGGGTTATTTAATGTCTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTAGGAATCCCAAGAAAAACATATTATGTCGTTGAAGAGGTTAAAGAGAATGCCACTCAAAAAAGTCAAAAGGTGTTTGTACATGTGCCATCAGAGATTACTACTAATGAAGTTGAGGAAATATTAGTGGAACACTTGCTTAGATATGTGAAGGATACAACCATTAGCATCCTTGTGACAAAGGTAAGTGCAAACCTCACAACCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGGGTTTCTTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAAGACGTGTTTAACCTGTTACCAAATCTCAATGTTGTTGATCTTTTGTCAAGGCTTTGGTATAGGGCTCCAGAACTTCTTTTGGGTTCAACTGATTATGGATTCAACATTGATCTCTGTAGTGCAGGATGCCTATTGGCTGAGATGCTTGTTGGAAGACCAATTATGCCTGGCAGGACAGGGGTACCAATTAGCTAA 726 0.3884 MPFEEDDKDPNIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDFDTHGLFNVYVPNPVLVIIDVEPKELGIPRKTYYVVEEVKENATQKSQKVFVHVPSEITTNEVEEILVEHLLRYVKDTTISILVTKVSANLTTLKGLDARLKEIRGFFDLVIDGKLPLNHEILYHLQDVFNLLPNLNVVDLLSRLWYRAPELLLGSTDYGFNIDLCSAGCLLAEMLVGRPIMPGRTGVPIS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0205 241 Gene3D Cytidine Deaminase, domain 2 1 132 - -
Gso20g0205 241 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 1 62 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso20g0205 241 Gene3D Transferase(Phosphotransferase) domain 1 192 236 - -
Gso20g0205 241 SUPERFAMILY Protein kinase-like (PK-like) 193 236 IPR011009 -
Gso20g0205 241 Pfam Maintenance of mitochondrial structure and function 112 188 IPR024969 -
Gso20g0205 241 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 197 - -
Gso20g0205 241 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0205 Gso-Chr20 2904404 2907259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0205 187 236 Core Cell Cycle Gene Families AT5G64960 56.000 4.69e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso20g0205 MitMem_reg 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0205 K03038 - gmx:100816479 476.478