Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0192 ATGGAAGAAGTTTGTCTGAATAGTGAGCCACTTTTTGATGAAAGTGATGAGGTTGATGTTGAGGGGAACTCTTCTGTAGCAGAACATGATCTTGAATCTTTAAACTCACAACCGAATAACTCTCCACTTCCAACTGTGGGTCTGGAGTTTGATTCTTTTGATGAAGTTTACAACTTCTACAATATCTATGCAAAGGAACAAGGCTTTGGTATCAGAGTGAGCAATTCATGGTTTAGATTGAAGAAGAAAGAGCGCTATAGAGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAACCCGAGACCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTGATTAGAATGGTTGAGTCCAACAGATGGAGAATAGTGGAGGTTGAGCTTCAACACAACCATCAAGTGAGTCCACAGAGCAAACGGTTTTACAAGTCACACAAGAAAATGATCGTTGAAGCCAGCAAATCACAACCACCGTCAGAGCCTGTAACGGAAGTACACACCATTAAGTTGTATCGAACCACTGTCATGGATGTTGATTACAATGGTTACTCAAATTTTGAAGAAAGTCGTGACACCAATTTTGATAAATTGAAATATTTGGAACTTAGAGAAGGGGATGCCAGTGCTATATATAATTATTTTTGCCGAATGAAGTTGACCGATCCAAATTTCTTTTACTTGTTTGATATTGATGATGATGGGCACCTAAAAAATGTTTTCTGGGCTGATTCCAGGTCAAGAATTGCTTATAATTACTTTAATGACATAGTTACAATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTGATATCATTTGTTGGTGTAAATCATCATGGACATTCTGTTCTATTGGGTTGTGGCTTCCTTGGACATGAATCAGTGGATTATTTTGTATGGATATTCAAGGCATGGCTTCAGTGTATGCTTGGTCATCCTCCACATGTTGTTATTACTGACCAGTGCAAGCCATTGCAAATTGCAGTTGCTCAGGTTTTCCCTCATGCTCGTCATTGTTATTCTTTGCAGTATATCATGCAAAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGATATGAAGAAATCAGAAGACAGCTGTATAATGCTGTCTATGAGTCATTAAAGATAGTTGAGTTTGAATCTTCTTGGGCTGATATGATTAAATGCCATGGACTGGTAGATAACAAGTGGCTTCAGACATTGTATAAAGATAGACATCTATGGGTTCCTGTTTACCTAAAAGATGCTTTTTTTATAGGACTGATCCCAACTAAAGAAAACGAGGGCCTTACTGCGTTTTTTGATGGATATGTGCATAAACACACATCCTTTAAGGAATTTGTTGACAAGTATGACTTAGTTCTTCACAGGAAGCACTTGAAAGAAGCCATGGCGGATTTGGAGTCTAGAAACGTAAGCTTTGAATTGAAAACGAGATGCAATTTTGAGGTCCAGCTTGCAAAGGTGTATACAAAAGAAATCTTTCAAAAGTTTCAATCTGAGGTTGAGGGCATGTACTCTTGCTTCAACACAAGACAGGTAAGTGTCAATGGATCTATAATCACATACGTTGTGAAAGAAAGAGTTGAAGTTGAGGGGAATGAGAAGGGAGTTAAAAGTTTTGAAGTCTTATACGAGACTACAGAATTGGATATTCGTTGCATTTGCAGTTTGTTCAACTACAAAGGATATTTGTGCAGGCATGCATTGAATGTTCTCAATTACAACGGCATTGAGGAAATCCCATCTCGGTACATCCTGCACCGCTGGAGGAGGGATTTCAAGCAAATGTTTAATCAATTCCATGTCTATGATAATGTTGATTCCCACAACCCTGTGCCCTTGTATACTCGTCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACAGGAGCATTATATGGTTGCTTTAAAAGAACTGGAGGAGTTGTTAGGCAAGTTTGATATAGAGGACAATAACATAATGTAA 2007 0.3857 MEEVCLNSEPLFDESDEVDVEGNSSVAEHDLESLNSQPNNSPLPTVGLEFDSFDEVYNFYNIYAKEQGFGIRVSNSWFRLKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESNRWRIVEVELQHNHQVSPQSKRFYKSHKKMIVEASKSQPPSEPVTEVHTIKLYRTTVMDVDYNGYSNFEESRDTNFDKLKYLELREGDASAIYNYFCRMKLTDPNFFYLFDIDDDGHLKNVFWADSRSRIAYNYFNDIVTIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFVWIFKAWLQCMLGHPPHVVITDQCKPLQIAVAQVFPHARHCYSLQYIMQRVPEKLGGLQGYEEIRRQLYNAVYESLKIVEFESSWADMIKCHGLVDNKWLQTLYKDRHLWVPVYLKDAFFIGLIPTKENEGLTAFFDGYVHKHTSFKEFVDKYDLVLHRKHLKEAMADLESRNVSFELKTRCNFEVQLAKVYTKEIFQKFQSEVEGMYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGIEEIPSRYILHRWRRDFKQMFNQFHVYDNVDSHNPVPLYTRLFNSALPVLEVGAQSQEHYMVALKELEELLGKFDIEDNNIM* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0192 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 23 665 - -
Gso20g0192 668 SMART 26again6 561 588 IPR006564 GO:0008270
Gso20g0192 668 MobiDBLite consensus disorder prediction 1 25 - -
Gso20g0192 668 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Gso20g0192 668 Coils Coil 466 486 - -
Gso20g0192 668 Pfam FAR1 DNA-binding domain 58 142 IPR004330 -
Gso20g0192 668 Coils Coil 653 668 - -
Gso20g0192 668 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g0192 668 Pfam MULE transposase domain 263 356 IPR018289 -
Gso20g0192 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 665 IPR031052 GO:0006355
Gso20g0192 668 Pfam SWIM zinc finger 558 583 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0192 Gso-Chr20 2711762 2716760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso20g0192 MULE 1.6e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0192 K17604 - gmx:100811666 1380.54