Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0188 ATGTTGGGTGGTCTATACGGAGACCTTCCTCCACCTTCCTCCGCCGAGGAAGACAACAAGCCCACCCCCAACGTCTGGTCCTCCAGCACCAAGATGGCTCCCGCCACGCTCCGCAAGCCCGCCTCCCTCTTCGCTCCCCCCCAAACCCTCCTCCGGGCCCAGCCCAAGCCCAGGCCCACCACCACAACCATCCCCAAGCCCATCCTCTCCTCCTCGCCCGCCCCTCCCCCTGATGACGCCCTCCTCCAGCCCGCCCTCGTTGGCGTCCAGTCCACCGTCCTCGAAGAATACGACCCGACCCGGCCCAACGACTACGAGGACTACCGCCGCGACCGCAAGCGCAAAGCCCGTGAGGCCGAGATGCTGCGCGAGCTCGAGCGCCGCCGCCACGAGGAGGAAGAGGAGGAGAAGGAAAGGGAAAAGGAAAGAGAAAGAGAGAGAGAAAGAGATCACAGCAATAACAACGATTCGTCGTCGTCGAGGCTTAATGTTTCCGGCGAAGAGGCGTGGAGGAGGCGCGCTGCGATGAGCGGGGCGGGGTCTGGGTCGGGGGCGGTGTTGGTGCCGAGGTCGCCGTCGCCACCCCCGGGGAATGTGGACGGGTTTACAATCGGGAAGTCGGAGACGGGGGGATTGGGGGTTGGGGCTGGCGGGCAGATGACGGCGGCGCAGCGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAGGGGCTGGGGAAACAGGAGCAGGGGATCACCACGCCTTTGATGGCGAAGAAGACCGATAGACGAGCCGGGGTTATTGTGAATGCCAGTGACAACAACAATAGCAGCAGCAGCAAGAAAGTTAAGAGTGTTAACTTCAATGGTGTGCCTACCAGGGTGCTGCTGCTCAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTAGAAGATGAGGTAGGATCTGAATGTGCCAAATATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCCGTTCATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGACGAGGAAAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCCGGCTTTACTTGA 1179 0.5835 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPRPTTTTIPKPILSSSPAPPPDDALLQPALVGVQSTVLEEYDPTRPNDYEDYRRDRKRKAREAEMLRELERRRHEEEEEEKEREKERERERERDHSNNNDSSSSRLNVSGEEAWRRRAAMSGAGSGSGAVLVPRSPSPPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNNSSSSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVHEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0188 392 Coils Coil 105 154 - -
Gso20g0188 392 ProSiteProfiles G-patch domain profile. 219 265 IPR000467 GO:0003676
Gso20g0188 392 MobiDBLite consensus disorder prediction 18 35 - -
Gso20g0188 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 373 IPR000504 GO:0003723
Gso20g0188 392 PIRSF SPF45 3 388 IPR040052 GO:0045292
Gso20g0188 392 PANTHER SPLICING FACTOR 45 SPF45 1 383 IPR040052 GO:0045292
Gso20g0188 392 Gene3D - 283 381 IPR012677 -
Gso20g0188 392 SUPERFAMILY RNA-binding domain, RBD 289 376 IPR035979 GO:0003676
Gso20g0188 392 SMART rrm2_1 288 369 IPR003954 GO:0003676
Gso20g0188 392 CDD RRM_UHM_SPF45 285 381 IPR034653 -
Gso20g0188 392 Pfam G-patch domain 222 261 IPR000467 GO:0003676
Gso20g0188 392 MobiDBLite consensus disorder prediction 1 213 - -
Gso20g0188 392 MobiDBLite consensus disorder prediction 99 155 - -
Gso20g0188 392 SMART G-patch_5 217 263 IPR000467 GO:0003676
Gso20g0188 392 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0188 Gso-Chr20 2646363 2650978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0188 225 260 C2H2 Transcription Factor Family AT5G26610 61.111 6.57e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0188 K12840 - gmx:100800998 559.681