Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0183 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTTAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTCTATGGCTGTGTAGGGGCCATCTCATCTCTTCAGCAACAAATTGATGTGTTGCAGACCCAATTGGCAGTGGCACAGGCTGAGGCTGTGCACCTCAGAGTGCGCCAAGCTGCATCACTCTACAGCCCCACTAGCCCAACCAACAGTGGCTCTCCATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGACCCCCTATGGTGATTCAATCTGGATACAAGTAGAACTCTAG 495 0.499 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQAASLYSPTSPTNSGSPSQAKPIFDMDMVVDQTPYGDSIWIQVEL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0183 164 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Gso20g0183 164 Coils Coil 92 112 - -
Gso20g0183 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 138 - -
Gso20g0183 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 138 - -
Gso20g0183 164 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0183 Gso-Chr20 2517875 2522711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0183 1 159 AS2 family AT1G31320 70.000 6.15e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso20g0183 LOB 5.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0183 - - gmx:100306560 317.775