LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g0171	ATGGATGCAAATCGCGAGCAAATTGTGGACGTTGGGTCGGTGGTGGAAGCCGTTTCTGCTGACGACGGTGACGCTCCTCTCTACAGCCTCGAAAGTCTCTGCATGCGTTGCGGTGAAAACGGGACTTCAAGATTTTTATTGACTTTAATTCCTAACTTTAGAAAGATTTTGTTGTCAGCTTTTGAATGTCCACACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTTGTTACTCTTTGGAGATCCCATCATGCGAACAAAAGATGCTAAATCGACAAGTGGTAAAAGCTGAATCTGCTACCATTAAGATACCAGAACTGGATTTTGAGATTCCACCAGAAGCTCAACGTGGTAGTCTGTCAACGGTGGAAGGGATACTTATGAGAGCAGCTGATGAACTTCAGGCTCTTCAAGAGGAACGCAAAAAAGTTGCTCCAGAGACAGCTGAGGCAATTGATCAGTTCCTGGTGAAACTGCGAGCCTGTGCAAAAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCGTTTGCACCATCATCTGATCCATCATTGACTATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGGTTCCACTCACATTGAAGGAACTCATGATCAAGCACCAGAAAGGGGAGAAGTGACTGCTGATCAAGTGAGGAGAGAACCTCATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGAGTAACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGTCGAATTCCTGAAAAAGGGAAAAAAATTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTCGATGAACAGAGAAAAAACAAGTGGATAGATTTTAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTCGATGATGCATTAGCCAATTCTTTTGTAGCTCCTGCAACTGATGATCTGAAAGAGGACAATCAATTATCATTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGCTGCTTATGAATCAACAAATACTACTAAAACTTAG	1488	0.4261	MDANREQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGTSRFLLTLIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPSCEQKMLNRQVVKAESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLRACAKGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVGSTHIEGTHDQAPERGEVTADQVRREPHGSIGATAGHRAIAQSNSSEIAEALFRYTAPEEVMTFPTSCGACAARCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKKITLNVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEQRKNKWIDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKEDNQLSFEEYERSWEQNEELGLNDIDTSSADAAYESTNTTKT*	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g0171	495	Pfam	ZPR1 zinc-finger domain	288	445	IPR004457	GO:0008270
	Gso20g0171	495	Pfam	ZPR1 zinc-finger domain	32	191	IPR004457	GO:0008270
	Gso20g0171	495	Gene3D	ZPR1, zinc finger domain	277	332	IPR042452	-
	Gso20g0171	495	Gene3D	ZPR1, zinc finger domain	24	77	IPR042452	-
	Gso20g0171	495	TIGRFAM	ZPR1_znf: ZPR1 zinc finger domain	34	216	IPR004457	GO:0008270
	Gso20g0171	495	TIGRFAM	ZPR1_znf: ZPR1 zinc finger domain	288	479	IPR004457	GO:0008270
	Gso20g0171	495	Coils	Coil	128	148	-	-
	Gso20g0171	495	MobiDBLite	consensus disorder prediction	473	495	-	-
	Gso20g0171	495	PANTHER	ZPR1 ZINC-FINGER DOMAIN PROTEIN	1	493	-	-
	Gso20g0171	495	PANTHER	ZINC FINGER PROTEIN ZPR1	1	493	IPR040141	-
	Gso20g0171	495	MobiDBLite	consensus disorder prediction	469	495	-	-
	Gso20g0171	495	Gene3D	ZPR1, A/B domain	333	475	IPR042451	-
	Gso20g0171	495	Gene3D	ZPR1, A/B domain	78	219	IPR042451	-
	Gso20g0171	495	SMART	zpr1	32	192	IPR004457	GO:0008270
	Gso20g0171	495	SMART	zpr1	287	447	IPR004457	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g0171	Gso-Chr20	2240635	2260365	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g0171	1	494	C2H2 Transcription Factor Family	AT5G22480	76.258	0.0	783

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g0171	K06874		-	gmx:100814878	984.556