Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0130 ATGTCTGATTCATTTGGTAGCACCTTTCACTCTTCCACTCCAAACTCCACCCTCAATTCCCATGCACCCCCCAAAATCACCACATTCTGCTCAATAGCCCAACCTTATTGCATTTGCACCCACTGCAACCACATCCTCACCTTCAACCACCATGTTGGTAATGTAGCAGAGGAAGGGACAAATAGCACAGGGTCCCATAATAATAATTTGCAGTCCCAGCAGCAACAAAGCACAAGGTGGAGTCCAACCCCAGTTCAGTTACTAGTCCTTGAGGAATTGTATAGGCAAGGCACAAAAACACCCTCAGCTGAACAAATTCAACAAATAGCTTCACAGTTACGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCCAGAGAGAGACAGAAGCGGCGTAGAAGGGAAATGGAGGAAAATAATAATAACAATATTTCTGCTTCTTCTTCTGGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATAGCAGAAAAGGGATCTAATGGGTGGACTCAGTTTGAGGGGAAAGACAGCATACAAGTTTTGATGAGGAGAAACATAGCCGAAAAACAAGCTAAGTTGCAGGAAATTATGGAAATGCCTTGTTTCCCTCCTGTTACTATGGAAGCATCAACTCCTACAACTTCACACAGAAGAACAACGCATTATAACACACAACTTTTAACCCCTCAAAACTATAATAATTTACCATCTTCAGTCATCAACAGAGAAAGTTTAAACTACTATGGTGGTGAAGAAAATGCAGCTCCTCGAACCCTTGACCTATTTCCACACAAGAGGGATGACCAACATGGAATTTCTCTTGCTGAGAGGAAATCATCTATGTTCTGTGCAAGTGCTTCTATGGACACTGAAGTCACCTCCAACAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 1014 0.429 MSDSFGSTFHSSTPNSTLNSHAPPKITTFCSIAQPYCICTHCNHILTFNHHVGNVAEEGTNSTGSHNNNLQSQQQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNNNNISASSSGEGLKETGCGVKETKKWASTSNCSGHAEESAALDIAEKGSNGWTQFEGKDSIQVLMRRNIAEKQAKLQEIMEMPCFPPVTMEASTPTTSHRRTTHYNTQLLTPQNYNNLPSSVINRESLNYYGGEENAAPRTLDLFPHKRDDQHGISLAERKSSMFCASASMDTEVTSNNQFFEFLPLRN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0130 337 SMART HOX_1 75 142 IPR001356 GO:0003677
Gso20g0130 337 ProSiteProfiles 'Homeobox' domain profile. 73 138 IPR001356 GO:0003677
Gso20g0130 337 MobiDBLite consensus disorder prediction 135 164 - -
Gso20g0130 337 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g0130 337 Pfam Homeodomain 77 137 IPR001356 GO:0003677
Gso20g0130 337 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 337 - -
Gso20g0130 337 Gene3D - 60 154 - -
Gso20g0130 337 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 337 IPR044555 GO:0003700|GO:0099402
Gso20g0130 337 SUPERFAMILY Homeodomain-like 78 140 IPR009057 -
Gso20g0130 337 MobiDBLite consensus disorder prediction 59 81 - -
Gso20g0130 337 CDD homeodomain 78 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0130 Gso-Chr20 1739500 1743658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0130 77 337 Wox Gene Family AT3G18010 32.990 1.28e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso20g0130 Homeodomain 4.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0130 - - gmx:100788830 644.039