Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0124 ATGGACGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACGGTTGGCATTGGTGGACCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGTTGGAGTAGATGAAGGGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGCGGTGGTAATACTTGATGGCACATATGCATTGCAAGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAAGCAGTCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCGGGTTCTGCTTTTCAAGGAAATGAAGCCCAAACAGATAATTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAGAATTTCATCATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGATTATTGGCTCTTGGGTACATTGTTGTTGTTAGTTACAAGCGTGCCTCCACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACTATTGATGTTCTTGGTGAGACGTTCATGGTGATGAGAGGAACTAATAGAAAGACTGTCAGAACAGAAGCATTAAGGATGGGTATTAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTCAGAGAAAAGGTGTACCTCGTCTTAGTACACCACCACTTGTGTCTAATACAACTGTGGCTGGTAGTCAAGAAACTGTGATCGCTGCACCAAAGCCAATTCGTGTTACCCCTAACCTTGTTACTGGGATAGATGATTTACCTCAGCCGTGGACTCGATCCCCGACAAAATCTAAAATGGAACCTGTTGCGGCTGAATGGCATTTCATATCTTCAGATTCTTCCCAGCCTGACAACTCAGTCCTAGACCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTTCAATGCCTGATTCATTTGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTACCAGTCATAGTTGGAATCGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAGTAGTTTCACTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCCCTGCATCCTGATATTCGAATATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACGGTGTTTCCTATGTTCCAGCAGCTTATTGAACCCCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCATATCAAGATATTGTTGCAATTCTCGATTCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGGCAGTTGAGTGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGAGAGCCTATCAAAGAAGGGAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTAGTACGGTTGCTGGTCTTCTCAATCTTGGGTACCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATACATTCAGATAAAGGGTGCTAATAAAGATGCAGTAGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCGGCTATAGAAAGAACTTCTGGTGGGATTCATTCTCAGCAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGATGTAGCTCTGCTTCAGATTCCTCATCAAGTAGGGTAGTCTCTCCAATTGAAGGAGTTATTGAGGAAATGCAATCAAAGATTAGAAGGCTTGAAAGGTGGCTAGCGATAAACACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCGCTGTATCAAAGGAAGCGCCAATAA 2862 0.3994 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRVGVDEGNDLDSIDFDALIKNLEDLTKGNDTSIPEFDYQEKKRVGYKAIKSASSAVVILDGTYALQAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAVYKVKCRSESSDGHSGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSMSFETIDVLGETFMVMRGTNRKTVRTEALRMGINGPWITKSYLEMILQRKGVPRLSTPPLVSNTTVAGSQETVIAAPKPIRVTPNLVTGIDDLPQPWTRSPTKSKMEPVAAEWHFISSDSSQPDNSVLDPSSFRDSIRLASMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGQLSDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGANKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIHSQQSARLLEIVEFIQSQGCSSASDSSSSRVVSPIEGVIEEMQSKIRRLERWLAINTVLWTFLMSALVGYSLYQRKRQ* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0124 953 CDD UMPK_like 65 227 - -
Gso20g0124 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 177 IPR027417 -
Gso20g0124 953 Gene3D - 64 243 IPR027417 -
Gso20g0124 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 688 IPR027417 -
Gso20g0124 953 SUPERFAMILY CYTH-like phosphatases 713 860 IPR033469 -
Gso20g0124 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 605 944 - -
Gso20g0124 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 483 605 - -
Gso20g0124 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Gso20g0124 953 Gene3D - 517 694 IPR027417 -
Gso20g0124 953 Gene3D - 705 865 - -
Gso20g0124 953 PRINTS Uridine kinase signature 518 535 - -
Gso20g0124 953 PRINTS Uridine kinase signature 545 556 - -
Gso20g0124 953 PRINTS Uridine kinase signature 639 649 - -
Gso20g0124 953 CDD UMPK_like 520 688 - -
Gso20g0124 953 SMART AAA_5 62 212 IPR003593 -
Gso20g0124 953 SMART AAA_5 517 661 IPR003593 -
Gso20g0124 953 PANTHER URIDINE KINASE 2 420 - -
Gso20g0124 953 PANTHER URIDINE KINASE 483 605 - -
Gso20g0124 953 PANTHER URIDINE KINASE 605 944 - -
Gso20g0124 953 Pfam Phosphoribulokinase / Uridine kinase family 108 224 IPR006083 GO:0005524|GO:0016301
Gso20g0124 953 Pfam Phosphoribulokinase / Uridine kinase family 520 685 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0124 Gso-Chr20 1576487 1597582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0124 513 676 PRT Gene Family AT1G55810 26.966 3.22e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0124 - - gmx:100787760 1796.56