Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0121 ATGTCTGCCTTTTATGATGCCCTCTGCACTGGAATGGATTGGACTGAAGTTTCCAATGACGTAGACGATGATTTGGGTCCACCAAATGGCACGGAGCAAGAGTCGGAGTCTGAACCTGAGGCTGAGAATGGAAGAAGGGCTTCAACTTCTAGGCCTAGACGACGTGATATGGCAGTTCAGAGGCAGAGAGTACCAAGGATGACATTGAGTGATTTGAGCGGTGTCTTCCATTTGACTATTAGTGCTGCAGCGGTCAAACTGGACGTAGGTGACTCTACCGTGAAGAGTATCTGCCGCAGAGGAAAATTGAAAAGATGGCCCCAAAGAAAGGTGCAAAGCCTTGCCAAGAAGGTCAGAGTACTCGAAAGAGCATTGAATTCGCCAGATCCAGGGGTGAAGCGAAGAACTCTAGATGAAATCCGAAGACTTCAGCAAGAAATAATTGAGAATTGTGGTGGAATTACCCCAACCGGAATACCGATGCTCCAATTCGATGAAGAATGA 504 0.4722 MSAFYDALCTGMDWTEVSNDVDDDLGPPNGTEQESESEPEAENGRRASTSRPRRRDMAVQRQRVPRMTLSDLSGVFHLTISAAAVKLDVGDSTVKSICRRGKLKRWPQRKVQSLAKKVRVLERALNSPDPGVKRRTLDEIRRLQQEIIENCGGITPTGIPMLQFDEE* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0121 167 Pfam RWP-RK domain 67 114 IPR003035 -
Gso20g0121 167 ProSiteProfiles RWP-RK domain profile. 54 135 IPR003035 -
Gso20g0121 167 MobiDBLite consensus disorder prediction 38 61 - -
Gso20g0121 167 PANTHER PROTEIN RKD4 1 152 IPR044607 GO:0003700
Gso20g0121 167 PANTHER RWP-RK DOMAIN PROTEIN 1 152 - -
Gso20g0121 167 MobiDBLite consensus disorder prediction 16 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0121 Gso-Chr20 1516589 1517652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0121 40 123 AtRKD Transcription Factor Family AT4G35590 31.461 4.72e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso20g0121 RWP-RK 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0121 - - gmx:102660093 324.709