Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0112 ATGGCATCCATCATCTCTTTCACCCTTAAGACCCTTCTATTCCTCTGCTTCTGTTCCTTTCACTTCCCACTCTCAACTTCATCAGAATCAAATCCTTCATTCCCCAAAGAAGCCCTCCCCAACAAACATGGTTACCTTCCAATAAGCCCCACTTCAACTTCTTCCATTTTCTACGCTTTCTATGAAGCCCAGAACTCAACTTTACCACTCTCACAAACCCCACTTCTCATATGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGAAACTTGTACGAACTTGGACCGTGGCGCGTCACGGAATCACTCACCCTTCAACCCAACCCTGGTGCTTGGAATAGAATCTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGAACTGGCTTCAGTGTGGCCTCAACGAGACAAGAAATTCCAACTGATCAAAACGGCGTTGCAAAACACCTTTTTGCTGCTATAACAAGCTTTCTTCAGCTTGATCCTGTTTTCAAGAATCGCCCTATTTATATTACTGGTGAAAGCTATGCTGGGAAGTATGTGCCTGCTATTGGGTATTACATATTGGAGAAAAATGCAAACTTGAAGGTTTCTGAAAGAGTGAATTTGGCTGGTGTGACTATTGGGGATGGCTTAACTGACCCTGAAACTCAAGTGGCTACTCATGCTCTGAATGCTTATTATGTTGGATTGATCAATGAGAGGCAAAAGCATGAGTTGGAGAACGCTCAATTGGAAGCGGTTCGGTTGACTCAAATGAGGAATTGGAGTGAAGCAACTGATGCAAGAAACAAAGTCTTGAGAATGTTGCAAAACATGACAGGGTTGGCTACTTTGTATGACTATACAAGGAAGGCTCCTTATGAGGATGATTTGGTTGAAAAATTCTTGAACATTGCTGAGGTGAAGAAGGCCTTGGGGGTGAATGAATCGTTTGTGTATGAGATATGCAGCGATGTTGTTGGGGCTGCATTGCATGCTGATGTGATGAAGAGTGTGAAATATATGGTGGATTACTTGGTGAGAAGGAGCAAGGTGTTGTTATATCAAGGGCAACATGATTTGAGGGATGGTGTGGTTCAAACAGAGGTTTGGGTGAAGACAATGAAGTGGGAAGGGATTGTGGAGTTTGTGAATGCTGAAAGGAAGATATGGACAGTTAATGGAGAGCTTGCAGGGTATGTTCAAAATTGGAAGTCTCTCACCAATGTTGTGGTTTTGGGTGCTGGGCATCTTTTGCCTACTGATCAACCTCTTAATTCTCAAGCAATGATAGAAGATTGGGTTTTGGAAAGGGGAGTGTTTGAAAATGCGCATAAGAGACATGTATCAAGTGAGTCTGTATTTGTTTTGTAA 1356 0.4322 MASIISFTLKTLLFLCFCSFHFPLSTSSESNPSFPKEALPNKHGYLPISPTSTSSIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMIGNLYELGPWRVTESLTLQPNPGAWNRIFGLLFLDSPIGTGFSVASTRQEIPTDQNGVAKHLFAAITSFLQLDPVFKNRPIYITGESYAGKYVPAIGYYILEKNANLKVSERVNLAGVTIGDGLTDPETQVATHALNAYYVGLINERQKHELENAQLEAVRLTQMRNWSEATDARNKVLRMLQNMTGLATLYDYTRKAPYEDDLVEKFLNIAEVKKALGVNESFVYEICSDVVGAALHADVMKSVKYMVDYLVRRSKVLLYQGQHDLRDGVVQTEVWVKTMKWEGIVEFVNAERKIWTVNGELAGYVQNWKSLTNVVVLGAGHLLPTDQPLNSQAMIEDWVLERGVFENAHKRHVSSESVFVL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0112 451 Coils Coil 228 253 - -
Gso20g0112 451 Pfam Serine carboxypeptidase 39 429 IPR001563 GO:0004185|GO:0006508
Gso20g0112 451 Gene3D alpha/beta hydrolase 25 444 IPR029058 -
Gso20g0112 451 SUPERFAMILY alpha/beta-Hydrolases 42 429 IPR029058 -
Gso20g0112 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Gso20g0112 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Gso20g0112 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Gso20g0112 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 401 414 IPR001563 GO:0004185|GO:0006508
Gso20g0112 451 ProSitePatterns Serine carboxypeptidases, serine active site. 171 178 IPR018202 GO:0004185
Gso20g0112 451 PANTHER CARBOXYPEPTIDASE 22 437 - -
Gso20g0112 451 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 437 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0112 Gso-Chr20 1407975 1409549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0112 292 429 Calmodulin-binding Proteins AT2G22960 20.863 2.62e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0112 K09645 - gmx:100780822 899.427