Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0108 ATGGCGGTTTTACCAAGTAGCTCCTCAAACTTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTTCACCAGTCCTTCTTCCCTTATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAGGCAGCAATGGAGACCCTCCTCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACTTTGAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCGAGGCAAGTGGAGGTGTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGAGGTGGTTTGGTTCCCTCACAGAGCAGAACCGGAGGCTGCAGAGGGAAGTGGAAGAGCTACGAGCCATGAAGGTGGGCCCACCCACCGTGATCTCCCCTCACTCCTGCGAGCCGCTCCCTGCCTCCACACTTTCCATGTGTCCCCGCTGCGAGCGTGTCACCTCCACCGCCGACAAACCGCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCACTTTGTCCCCTAAAGTGCCGCCAACGCAATCCCGTCAACCCTCCGCTGCCTGTTGA 657 0.5464 MAVLPSSSSNLELTISVPGFASSPVLLPLSSVKELDINQVPLEEDWMASNMEDEEEGSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTSTADKPPSAAAAAAAATLSPKVPPTQSRQPSAAC* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0108 218 CDD homeodomain 63 121 IPR001356 GO:0003677
Gso20g0108 218 Gene3D - 56 125 - -
Gso20g0108 218 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Gso20g0108 218 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Gso20g0108 218 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gso20g0108 218 SMART HOX_1 62 124 IPR001356 GO:0003677
Gso20g0108 218 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Gso20g0108 218 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Gso20g0108 218 MobiDBLite consensus disorder prediction 204 218 - -
Gso20g0108 218 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Gso20g0108 218 MobiDBLite consensus disorder prediction 47 66 - -
Gso20g0108 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 205 - -
Gso20g0108 218 PANTHER - 1 205 - -
Gso20g0108 218 MobiDBLite consensus disorder prediction 183 218 - -
Gso20g0108 218 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0108 Gso-Chr20 1336563 1340963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0108 32 199 Homeobox Transcription Factor Family AT1G70920 61.272 2.19e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso20g0108 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0108 K09338 - gmx:100778684 421.394