Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0102 ATGGATGCTCGTGGAGAAGGGTCTTCTACTTCTTACTACAACGTTCTTGGTGTTAGCTCAGATTCTAACGTGGATGAGATTAGACGTGCTTATAGGAAGCTGGCTATGCAATGGCATCCTGATAAGTGCACAAGGTCGCCTTCTTTGCTGGGTGAAGCTAAGCGCAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGTTGTCTGATAGTAAGAAAAGAACTATGTATGATGCGGGCTTGTATGATCCTCAAGAGGAAGAGGATGAGGGCTTTTCTGATTTTGTGGAAGAAATGTTGTCCCATATGGCTCAAGTGAGGCGAGAGGGAAAGCATTACGGTTTGGAAGAGTTGCAGGGCATGTTAATGGAAATGGCTAAAGGATTCGAGTGTCCTTCAATGTATTGTGGGGTGAACTCTGTGATTGATGAGTCTCCATGCGTAAAGAGAACGCGTTTTGACACAAACATGATGGAGAATAAGGGGTCACATTTCCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 525 0.4362 MDARGEGSSTSYYNVLGVSSDSNVDEIRRAYRKLAMQWHPDKCTRSPSLLGEAKRKFQQIQEAYSVLSDSKKRTMYDAGLYDPQEEEDEGFSDFVEEMLSHMAQVRREGKHYGLEELQGMLMEMAKGFECPSMYCGVNSVIDESPCVKRTRFDTNMMENKGSHFQVPDLNLYCS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0102 174 Pfam DnaJ domain 12 77 IPR001623 -
Gso20g0102 174 PRINTS DnaJ domain signature 13 31 IPR001623 -
Gso20g0102 174 PRINTS DnaJ domain signature 31 46 IPR001623 -
Gso20g0102 174 PRINTS DnaJ domain signature 52 72 IPR001623 -
Gso20g0102 174 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Gso20g0102 174 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Gso20g0102 174 PANTHER PUTATIVE, EXPRESSED-RELATED 1 171 - -
Gso20g0102 174 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 171 - -
Gso20g0102 174 CDD DnaJ 12 69 IPR001623 -
Gso20g0102 174 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Gso20g0102 174 Gene3D DnaJ domain 2 101 IPR036869 -
Gso20g0102 174 SMART dnaj_3 10 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0102 Gso-Chr20 1228716 1230810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0102 12 78 C2H2 Transcription Factor Family AT1G74250 50.000 4.55e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0102 - - gmx:100306079 360.147