Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0098 ATGGCCGGCGAGGAGCTCGCCGGAGACCACACGCCGGAGCTGCTGTGTCTGGTCCATGACATCGCCGGAATGTGCTCGGCGTTATCCTCCTCCGCCGGCTCCGCCGGCGCCATGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACCTCTTCGAGGAGATTAAGGAACTCAGCAACAACGTTGTCGGTGGTTCTTCTTCTTCTCCTTCTCCTTCTTCCTCGGCTTCTTCAAAGTGGTCTTCTGATCTGGTCCTCGCGCTTCACTCCGCAAGACGCTTGCTTTCCGTCGCTAGAAACTTCCGCTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCATATGACGATTTGGACATCTCGGAGGAAGTCAAGGAGCAGGTGGATTTGGTGAGAACACAATTGAGACGGGCCACGGATAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGGCTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAGTAGGTTGCACAAACAACAAAGCTGCCCTGAAAATTTATCAGAACTAGACAGCATTCCTATCAACGATGAAGGGAAATGCTGCAGCACAAATCCTGCCAGATCTCGCTTGGAAAGAACAAGGAGCATCCCTACTGAAGTTGAAGTTTCCTTAAATGCAATTGAACCTGAAAGTCAAGAAATTTCTGAGACAAAGAGTCTACCTGAGGTTAAAAAGACTGAAGGAATTGTGATCCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACCAATGGAAAATTAAAGAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTATGGAAGCTCTCCAGCCGATCTGTTGAGGAGCGTAGATCAGCTGTTACTGAAATTCGATTGCTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTACTGACACAAGACAATGCAGTTACCTCAATTCTCAACCTCTCCATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAGATAATTATTGGCGCCTCAGGAGCTATACCGGCTTTAGTGGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGTATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCGATGGTTGATGAAGCCCTAACGATAATGTCAGTTCTTGCAAGCCACCAAGAGGCAAAAGTTGCCATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTACTTGCCTTGTGCAAGAGGGATGCAGATAATCTTGCTTGTATAAGTAGACTTGGTGCTCTCATACCTCTCTCTGAACTTGCTCGAAATGGCACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAACATATTCATAAGTTGCAGCAACTTTGA 1956 0.4535 MAGEELAGDHTPELLCLVHDIAGMCSALSSSAGSAGAMFRKDCTDLVRRISLLTHLFEEIKELSNNVVGGSSSSPSPSSSASSKWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSHELSQPLAEEISQVLGKSVSRLHKQQSCPENLSELDSIPINDEGKCCSTNPARSRLERTRSIPTEVEVSLNAIEPESQEISETKSLPEVKKTEGIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVWKLSSRSVEERRSAVTEIRLLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGALIPLSELARNGTERAKRKATSLLEHIHKLQQL* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0098 651 Gene3D - 353 448 IPR011989 -
Gso20g0098 651 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Gso20g0098 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Gso20g0098 651 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Gso20g0098 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Gso20g0098 651 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Gso20g0098 651 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Gso20g0098 651 PANTHER U BOX DOMAIN-CONTAINING 17 648 - -
Gso20g0098 651 CDD RING-Ubox_PUB 276 318 IPR045210 -
Gso20g0098 651 Gene3D - 551 650 IPR011989 -
Gso20g0098 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Gso20g0098 651 SMART arm_5 483 523 IPR000225 GO:0005515
Gso20g0098 651 SMART arm_5 524 564 IPR000225 GO:0005515
Gso20g0098 651 SMART arm_5 607 647 IPR000225 GO:0005515
Gso20g0098 651 SMART arm_5 442 482 IPR000225 GO:0005515
Gso20g0098 651 SMART arm_5 401 441 IPR000225 GO:0005515
Gso20g0098 651 SMART arm_5 565 605 IPR000225 GO:0005515
Gso20g0098 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Gso20g0098 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Gso20g0098 651 Gene3D - 449 550 IPR011989 -
Gso20g0098 651 SUPERFAMILY RING/U-box 271 346 - -
Gso20g0098 651 Coils Coil 145 165 - -
Gso20g0098 651 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 17 648 - -
Gso20g0098 651 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Gso20g0098 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0098 Gso-Chr20 1169768 1172968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0098 37 650 U-box Gene Family AT1G23030 62.298 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0098 - - gmx:100811123 1198.34