Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0095 ATGGCAAGAAAAACCAAGTCCATTTTCTTCACCTTCTTATTATGCTCTTGGGTGGTGGTAGTAGTAGCCCAAGAGGTAGCAATTGCAAAATCCGAAAGTGAAGCATTAGGGGAACCGGAATTAGAAAAAAGAGAAACACTTGAAATCATCATTGGTGGTGGTGGTGGTGGTGGTTACCCTGCTCCTTCTCCTTCTCCATCTTCCCCTGCATATTGCCCACCTCCTCCACCAAAACCACTGAGCCGGTTAGAAAAAGCGCGTCGAGTGCTTCTCAAGTTCAAAACCCTAATCTATGATCCAGACTGTTACACGCAAAGCTGGAACGAGAACACCGACACGTGTGATTTCAACGGGGTACGATGCGCCACATATCCAAACTCAGAAGAGAAAGCAGTGGCTGGACTTGACCTAAACGGAGCAAAACTCAGCACTAAAGACGGTTGCAATTTGCCCCTCACGGGTCTCGTCGACAGCATACCCGAGTTAACATTCTTCCACGTTAACTCCAACAACTTCTCCTTCACCGGTGGCTTCCCCAACAACATCACGACCTTCCCTTTCTTCTTCGAGCTTGACCTAAGTAACAACAAAGTCAGTGGCCAGTTCCCCACGCAAGCGATTCAGAACAACCAGTTAGTCTTCCTGGACCTCAGGTTCAACCAGCTTACCGGGCCGATAGACCCGAAACTCTTCCAGAGGGACCTCGATGTGATCTTTGTCAACGATAACCAGTTCACCGGGTGCCTCCCGGAGAATTTCGGGTCCACGCCGGCCCGGTACCTTACATTTGCCAACAACAGACTCTCCGGGTCACTCCCGAAGAGTCTCGGCTACGCGCCGAGTCTCACCGAGGTGCTCTTCTTGGGGAACCATTTCGAAGGGTGTCTGCCCTTCGAAATAGGTTACCTCAAGAAGGTCGTCGTGTTTGACGTAAGCAAAAATCTCTTGACCGGCCCTATCCCGCTCTCCTTCGGATGCTTGAAGAGCATTCAGTTTCTTAATTTGGCGCAAAACAAGCTCTACGGTTGTGTTCCGGACAACCTTTGTCAAATTCCTTCTATCCGGAACAATGGGAATCTCTCTTTGGCGGATAATTATTTCAAGGAAATTGGACCTTCGTGTTGGAGTTTGATCAAGTCCAAGGTTTTGGATGTGTCAAGAAACTGCATTCCGGGGCTTCCAGACCAAAAATCACCCAAAGAATGCTACCAGTTTTACAAAACAAAGAAGACATGCCCTAACCAGAATTCATTTTACTACGTCCCGTGTAAATCCCACTGGGGGACACAGAGCAACAAGCCCCCTGCTCCACCTTCTGAGCCTGTGACTTACAACGCTCTCAAACCACATCGCTTGAGATTGTGA 1365 0.4886 MARKTKSIFFTFLLCSWVVVVVAQEVAIAKSESEALGEPELEKRETLEIIIGGGGGGGYPAPSPSPSSPAYCPPPPPKPLSRLEKARRVLLKFKTLIYDPDCYTQSWNENTDTCDFNGVRCATYPNSEEKAVAGLDLNGAKLSTKDGCNLPLTGLVDSIPELTFFHVNSNNFSFTGGFPNNITTFPFFFELDLSNNKVSGQFPTQAIQNNQLVFLDLRFNQLTGPIDPKLFQRDLDVIFVNDNQFTGCLPENFGSTPARYLTFANNRLSGSLPKSLGYAPSLTEVLFLGNHFEGCLPFEIGYLKKVVVFDVSKNLLTGPIPLSFGCLKSIQFLNLAQNKLYGCVPDNLCQIPSIRNNGNLSLADNYFKEIGPSCWSLIKSKVLDVSRNCIPGLPDQKSPKECYQFYKTKKTCPNQNSFYYVPCKSHWGTQSNKPPAPPSEPVTYNALKPHRLRL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0095 454 Pfam Leucine rich repeat N-terminal domain 86 121 IPR013210 -
Gso20g0095 454 MobiDBLite consensus disorder prediction 62 77 - -
Gso20g0095 454 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 437 - -
Gso20g0095 454 SUPERFAMILY L domain-like 85 390 - -
Gso20g0095 454 PANTHER BNAC05G26270D PROTEIN 27 437 - -
Gso20g0095 454 Gene3D Ribonuclease Inhibitor 257 426 IPR032675 -
Gso20g0095 454 Gene3D Ribonuclease Inhibitor 83 256 IPR032675 -
Gso20g0095 454 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0095 Gso-Chr20 1093883 1095742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0095 82 405 Leucine-rich Repeat extension Gene Families AT4G13340 40.798 1.65e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0095 - - gmx:100796207 872.078