Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0094 ATGACGAACGCAGAGGGAGAAGAGAAAGCTTTTGTTTGTCAGTCAGCAGAGCGCGCGGGGGAAAGAGGGTTTTTGGCCTTTGGGTTTTATAAAGAAAGCGTCGGTAAAGCTGGTGGTGACAAATGGAAATCGCTGTCTGATGCTGAAAAGGCCCCCTTCGTTGCTACGGCCGAAAAGAAGAAACAAGAGTATGAGAAAACTATTTTGGCTTACAATAAGAAATTGGAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGGTAGATTGA 306 0.451 MTNAEGEEKAFVCQSAERAGERGFLAFGFYKESVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKKLEGKNSEEDESDKSKSEVNDDEEDEVD* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0094 101 SUPERFAMILY HMG-box 34 79 IPR036910 -
Gso20g0094 101 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 33 72 IPR009071 -
Gso20g0094 101 MobiDBLite consensus disorder prediction 72 87 - -
Gso20g0094 101 Coils Coil 54 81 - -
Gso20g0094 101 MobiDBLite consensus disorder prediction 72 101 - -
Gso20g0094 101 Pfam HMG (high mobility group) box 34 72 IPR009071 -
Gso20g0094 101 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 99 IPR031061 -
Gso20g0094 101 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 99 - -
Gso20g0094 101 Gene3D High mobility group box domain 7 97 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0094 Gso-Chr20 1089520 1092718 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso20g0094 HMG_box 6.7e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0094 K25507 - gmx:113000769 159.458