LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g0092	ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTTGACTCCGAGAGTGAGAACTCAAGGAACAAGGTGCAACAACATCAGCAGCATCATGGTTTTGCTCATGCTAACAAGGAACACCCTCAAGAGAAAAAACCGAGTTTTGATGAGTTTCGGTCAACAACACCCTCAAAGTTTGCCACTTCTGGGATGCAAGAATTGACCCTCAGCTATCTCTGTGAGAATCCAAAATTGGGTCTTGCTGAGAGAGAGGTTGGTGATAGAAGCTTGGTGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCAGATCAAGATGAGAAATGCCAATCTGGGTTGGGTCTGACAGAAGGGGTTAGTCTCTCGCAGCGTGACGAATTAAGATTTAAAACGTCGTTGGGAGAGGTGTCCCCGTTTAGTGTGCAACAGTACTTCGAACAGAATTGTCTTCGAAGGAAGATATCCGTGGGAAACCAAAACCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGACAAGGGAGAATTCTTCAAAGAGATCCATGGAGGAAGAGTGTGAAAGGGAGACGAATGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTTAGCCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCCAACGCTTTGCAAAATGGCGACCAACTCGTTAGGCCAAAGCCTAGTAAGCCATCCACAAGGACCACAACTACTATCAATTCATGTTCAAATGATTACACAGCAGCTTCTGTGTCTCACTCTTACTCTCACCCTTTCTCACACAACCAAAGTTGCTCACTCACCCGAAATTCGACCGAGAATTTCGAGTACTCACACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGGACTAATGGCTCGGTTCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGGTCAATCATTCCTTCATGCAAGGGAATAGTCAGTATAAGGCTACTAGCTCAGAAAACCAATCTGTTTTCCCTTCAGAATTGCCTGCAAGAATGAGATTTGAAGCCAAGTCAGAGGGCTCAAGAGGAAAGAATTCTGGGAATTTAAGAGGGTTGGAAGGTGTGGATGGTGGGAAAATGAAATTTTCTACATCAGAGAGAGTTCTAAGAGAGATTGTGTCTGAGTCTATCCCAGCCATGGCATTGACATTTCAGGAGTTCACTGAAGAAGTCATAACTTCAATTAAGGAATACCTGAAAGGTCTCATTGAAATGCCAGAGAAGAAAGGAGAACTAGAGAGCCTCCAGAACCGGCTCGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCAAAGTGTCATAAGCAGCAGCTGGAGATTTTGGCTGCTATCAAGATGGGGCTTGGGAGCTTCTTGTCCGGTAAGTTCCAATTCGCGGAGACAGTGGATGTTTTCTTGTACATGAGGTGTAGAAATGTGAACTGCAAGAGCTTGCTTCCTGTTGATGACTGTGACTGCAAGATGTGTTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTATGCAAGCAACACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCTCACTGGTGTCATGCTGCATGTGCCATTCAGAGGAATCTAATCAAACCTGGGCCTAGTTTGAAGGGTCCTTCTGGGACCTCTGAGGTGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGTTTTGTCAAAGATGTCTTTGTGTGTTGTGCCAAGGATTGGGGGCTAGAAACCTTGGCGAAAGAGCTTGACTGTGTGAGGAGGATTTTCCGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACCGAAGATATGCTGTTAAAGCTTCAAGCTAAACTGGTTTCTCCTTTAGATGCCTGCAACCACATCATACAGTTTTTCAACTACGTGGATGGCGTGTCAGACTTTCCTGCTTCTGCTATATCCTCAAAGGATTTGTCAACATCTAAGGCTAACCTTGCAATGGACACAACAACATCATCTCTTCCACAATCTACTTCTCTAATACAAAAATACACTTATGACATGAGCTACACTAGGTCAAATGATCTTCAACAAAAAGACCTCAAATCCTCCCTCTTAAGTGAACATAAAAATGAGAGTGATTTCCACTTAGAGGCTCTATTAGGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCGTGCGGATAAAAGAGGCCGAAGCGAGAATGTACCAAAACAAGGCAGATGAGGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAAGAGTATGCAGAAAGGATTGGCAAGATTTGCTTGAATGAGGCAGAGGAAAGGAGGAAGAACAAATTTGATGAACTCAATGTCTTGCAAAATTCCCACTACGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATCCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCACCAACGGGTTTAA	2541	0.442	MIGGKDLVPNGVDSESENSRNKVQQHQQHHGFAHANKEHPQEKKPSFDEFRSTTPSKFATSGMQELTLSYLCENPKLGLAEREVGDRSLVKGKEVVVYGNSDQDEKCQSGLGLTEGVSLSQRDELRFKTSLGEVSPFSVQQYFEQNCLRRKISVGNQNQKQDQDEKWVERDFLSLSETRENSSKRSMEEECERETNGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVRPKPSKPSTRTTTTINSCSNDYTAASVSHSYSHPFSHNQSCSLTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALVNHSFMQGNSQYKATSSENQSVFPSELPARMRFEAKSEGSRGKNSGNLRGLEGVDGGKMKFSTSERVLREIVSESIPAMALTFQEFTEEVITSIKEYLKGLIEMPEKKGELESLQNRLGRRSDLTRETLSKCHKQQLEILAAIKMGLGSFLSGKFQFAETVDVFLYMRCRNVNCKSLLPVDDCDCKMCSGNKGFCSSCMCPVCMSFDYASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHTSEMYGFVKDVFVCCAKDWGLETLAKELDCVRRIFRGSEDRKGKELHIKTEDMLLKLQAKLVSPLDACNHIIQFFNYVDGVSDFPASAISSKDLSTSKANLAMDTTTSSLPQSTSLIQKYTYDMSYTRSNDLQQKDLKSSLLSEHKNESDFHLEALLGKGGGLESLESIVRIKEAEARMYQNKADEARREAEGFQKMIKTKAAQMEEEYAERIGKICLNEAEERRKNKFDELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKHQRV*	847

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g0092	846	MobiDBLite	consensus disorder prediction	178	200	-	-
	Gso20g0092	846	Pfam	Coiled-coil region of Oberon	707	835	IPR032535	-
	Gso20g0092	846	Coils	Coil	796	816	-	-
	Gso20g0092	846	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	845	IPR004082	-
	Gso20g0092	846	MobiDBLite	consensus disorder prediction	1	55	-	-
	Gso20g0092	846	Pfam	PHD - plant homeodomain finger protein	487	611	IPR032881	-
	Gso20g0092	846	CDD	PHD_OBE1_like	517	576	-	-
	Gso20g0092	846	Coils	Coil	741	775	-	-
	Gso20g0092	846	MobiDBLite	consensus disorder prediction	31	50	-	-
	Gso20g0092	846	MobiDBLite	consensus disorder prediction	228	247	-	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	400	422	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	439	454	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	478	499	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	524	544	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	597	616	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	742	762	IPR004082	-
	Gso20g0092	846	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	781	803	IPR004082	-
	Gso20g0092	846	PANTHER	PROTEIN OBERON 3	1	845	-	-
	Gso20g0092	846	MobiDBLite	consensus disorder prediction	178	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g0092	Gso-Chr20	1072754	1076752	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g0092	487	616	PHD Gene Family	AT5G57380	23.846	8.99e-08	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g0092	-		-	gmx:100816647	1664.43