Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0087 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTAAAAATGCATTGGCAACTCATCCGGAAGATGACTCAGATCGTTGGGAGAAGATAGCCGCTGATGTGCCGGGGAAGACTATAGAAGAAATCAAACAGCATTATGAGCTCTTGGTTGAAGATATTAACCAGATTGAATCTGGTTGCGTGCCTCTTCCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCCAGTGATGAAGGAGCTGGCAAGAAGGGCAGCGGTCCTGGGCATTATAGCGGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGGATTGCTTGGACTGAGGATGAACACAGTTCATTGGAGCCGGGAACTGAGCAATCAATGACTGGAAAGGATTTGGAAATTGAAGGATACACAGTTGGGGGGCTGTCTATTGGAGGCCATGAAACATGCGTCATTTTCCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAGAACTTTCTTTTAATCACCCATGCTCACATGGATCACATTGGAGGACTTCCTATGTATGTTGCCACACGTGGTTTGTATCGTATGAAGCCCCCTACGATTATTGTGCCAATTTCAGTAAAGGAGGATGTAGAGAAGCTTTTTGAGATTCACAGGAAAATGGATCAATCAGAACTTAAGCACAACCTGATTGGCTTGGATATAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTCCGGACTTACCATGTTATACCTAGCCAGGGTTATATACTATATTCTGAAAAACAGAAACTTAAACCAGAGTATGTTGGCCTTTCTGGAAATGAAATAAAGAATTTGAAGTCATCTGGCGTGGAGATAACGTACACTTTGACAGAACCAGAAATTGCTTTCACGGGAGATACCATGTCAGATTTCATAGTTGATGAAAATAACACAGATGTCTTACGGGCTAGAATTCTTGTATTGGAGTGCACCTTTGTTAACAATTCAATCACTGTGGAACATGCCAGAGATTATGGACACACTCATCTGTCCGAGATAATAAGTTATGCTGAGAGTTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCGGCTCGTTACACAGTAGAGGAAATTCAACACGCTGTAAGTGCATTGCCTCCCAGTTTATCTGGTCGAACTTTTGCGCTTACCGAAGGTTTCTGA 1254 0.4274 MTVDEVDSSSEWSREQDKAFKNALATHPEDDSDRWEKIAADVPGKTIEEIKQHYELLVEDINQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGPGHYSGESNHGTKASRSDQERRKGIAWTEDEHSSLEPGTEQSMTGKDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDIGEEFYLRKDLKVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTGDTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAILLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0087 417 Pfam Beta-lactamase superfamily domain 185 386 IPR001279 -
Gso20g0087 417 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Gso20g0087 417 CDD SANT 11 58 IPR001005 -
Gso20g0087 417 MobiDBLite consensus disorder prediction 1 37 - -
Gso20g0087 417 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gso20g0087 417 MobiDBLite consensus disorder prediction 8 37 - -
Gso20g0087 417 Gene3D - 5 71 - -
Gso20g0087 417 MobiDBLite consensus disorder prediction 67 142 - -
Gso20g0087 417 CDD RNaseZ_MBL-fold 154 346 - -
Gso20g0087 417 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gso20g0087 417 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gso20g0087 417 SMART sant 8 60 IPR001005 -
Gso20g0087 417 MobiDBLite consensus disorder prediction 109 132 - -
Gso20g0087 417 MobiDBLite consensus disorder prediction 68 85 - -
Gso20g0087 417 PANTHER - 104 417 - -
Gso20g0087 417 Gene3D - 150 410 IPR036866 -
Gso20g0087 417 SUPERFAMILY Metallo-hydrolase/oxidoreductase 163 397 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0087 Gso-Chr20 1015877 1024656 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso20g0087 Lactamase_B_2 6.2e-14 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0087 K00784 - gmx:100809325 558.91