Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0084 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCATTGGCAACTCATCCGGAAGATGACTCAGATCGTTGGGAGAAGATTGCCGCTGATGTGCCGGGGAAGACTATAGAAGAAATCAAACAGCATTATGAGCTCTTGGTTGAAGATATTAACCAGATTGAATCCGGTTGCGTGCCTCTTCCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCCAGTGATGAAGGAGCTGGCAAGAAGGGCAGCGGTCCTGGGCATTATAGCGGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGGATTGCTTGGACTGAGGATGAACACAGGTTATTTCTTCTGGGCTTGGATAAGTATGGAAAAGGCGACTGGCGAAGCATATCAAGGAACTTTGTGGTGACACGAACTCCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTTAACAATGGAGATATTTCAGCACCTCAAGGGCCAATAACCGGTCAAACAAACGGTTCTGCTGGAAATTCTACTGCCAAAGCAGCCAAAGCGGCCACCCCGGCCTCAACTGGGGTGCCAGGTGTTGGAATTTATGCAGCTCCAACCATTGGACAACCTATAGGAGGACCCTTAGTATCTGCTGTTGGCACCACAGTGAACCTTCCTGCACCTGCACACATGGCATATGGGGTCCGAGCCCCAGTACCCGGTGCAGTTGTACCTGGTGCACCGGTAAATATGGGCCCTGTGACGTACCCTATGCAGCATACGTCTGTTCCTCACAGGTGA 891 0.4837 MTVDEVDSSSEWSREQDKAFENALATHPEDDSDRWEKIAADVPGKTIEEIKQHYELLVEDINQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGPGHYSGESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSAGNSTAKAAKAATPASTGVPGVGIYAAPTIGQPIGGPLVSAVGTTVNLPAPAHMAYGVRAPVPGAVVPGAPVNMGPVTYPMQHTSVPHR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0084 296 CDD SANT 11 58 IPR001005 -
Gso20g0084 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gso20g0084 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gso20g0084 296 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gso20g0084 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Gso20g0084 296 MobiDBLite consensus disorder prediction 1 38 - -
Gso20g0084 296 PANTHER TRANSCRIPTION FACTOR KUA1 7 284 - -
Gso20g0084 296 MobiDBLite consensus disorder prediction 68 119 - -
Gso20g0084 296 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 284 - -
Gso20g0084 296 Gene3D - 121 173 - -
Gso20g0084 296 CDD SANT 122 167 IPR001005 -
Gso20g0084 296 Gene3D - 5 71 - -
Gso20g0084 296 MobiDBLite consensus disorder prediction 68 85 - -
Gso20g0084 296 SMART sant 119 169 IPR001005 -
Gso20g0084 296 SMART sant 8 60 IPR001005 -
Gso20g0084 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gso20g0084 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Gso20g0084 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Gso20g0084 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gso20g0084 296 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Gso20g0084 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Gso20g0084 296 MobiDBLite consensus disorder prediction 186 213 - -
Gso20g0084 296 MobiDBLite consensus disorder prediction 8 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0084 Gso-Chr20 987732 998512 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0084 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0084 - - gmx:100797809 561.992