Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0071 ATGGGTTTGGTGGTTCCTGAAGAAGAACTAAGCTTAGATTTGAGACCCTCTTTTGTTCCAAAAACCATCACTGATTTTCTCTGCCACCTTTCCACCACCCCAAATGCATCCCACAAGGTGTCCTTGCTCGATGACTTTGTCCACAGATTGGAACTCGAATTGGCCAAGATCCAAGCATTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCTTTGAAGGTGGAATCAGAAAAATGCAGGGCTTGCAAGTCTGAGCCAGTGTTTGAGGAGTTCATTCCTCTGAAGAAAGAGTGTGATCAGAGGAAGGAAATTGAGAAGGAGAAGGAATGCAGGGACAAGAAGAATTGGATGAGTTCTTTTCAGCTTTGGAACAATGATGATAAAGCTGATAATAATAACAATGCATATGAATGTGACAAAAAACACAACTATAGAGTTGAAAACAAGAATAATGGAGAAAAAAGAAAATCTGTGACCAAGGACTTGTTCCAATATGGTAGAATTAGAAATGGAGAGAAGGGGTTTGTTATTCCTTTTTCCTCTTACCCTGCAACAAAGGAAGAAAAGGAAGATTGTGTTGCCAATGGACTTTCTCTTCAGACACCTGGAACTGCAGTGAAAAGCACTAGGGAGGGATCTGGTTGTAGAACCAGCTCTTGCAGGGTGGGTTCCTCCGCTCCTTCACCGCTGCATCAGCCACAAAGCAGCCGGAAACAAAGGCGGTGCTGGTCACCGGAGTTGCATAGCCGGTTTATTAAGGCTTTAGAGGTGCTTGGAGGTTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTAGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAAAATACCGGCTTCATACACAGCGAGTTCCAGTTGCTACAGCTGCAAATTTTAGTCGGTCTGCTGTAGATCTTGGAGGCTTGTGGATGCACAATGAATCCTTGAAGGGTGGCAGTTCTGGTTCTCCTCAAGGCCCTCTCCAATTAGCCACACAATCGGGGGAAGCAACATCCCAAACAGAAGGTGACAACATGATAGATGATGATGATGTAAAATCGGACTTATAA 1107 0.439 MGLVVPEEELSLDLRPSFVPKTITDFLCHLSTTPNASHKVSLLDDFVHRLELELAKIQAFKRELPLCMFLLNDAISALKVESEKCRACKSEPVFEEFIPLKKECDQRKEIEKEKECRDKKNWMSSFQLWNNDDKADNNNNAYECDKKHNYRVENKNNGEKRKSVTKDLFQYGRIRNGEKGFVIPFSSYPATKEEKEDCVANGLSLQTPGTAVKSTREGSGCRTSSCRVGSSAPSPLHQPQSSRKQRRCWSPELHSRFIKALEVLGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTQRVPVATAANFSRSAVDLGGLWMHNESLKGGSSGSPQGPLQLATQSGEATSQTEGDNMIDDDDVKSDL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0071 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 367 IPR044787 GO:0003700|GO:0006355
Gso20g0071 368 MobiDBLite consensus disorder prediction 208 248 - -
Gso20g0071 368 PANTHER TRANSCRIPTION FACTOR HHO6 9 367 - -
Gso20g0071 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Gso20g0071 368 Gene3D - 243 301 - -
Gso20g0071 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Gso20g0071 368 MobiDBLite consensus disorder prediction 327 368 - -
Gso20g0071 368 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Gso20g0071 368 MobiDBLite consensus disorder prediction 208 246 - -
Gso20g0071 368 MobiDBLite consensus disorder prediction 328 354 - -
Gso20g0071 368 SUPERFAMILY Homeodomain-like 242 302 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0071 Gso-Chr20 866877 869978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0071 9 332 G2-like Transcription Factor Family AT2G03500 38.592 1.12e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso20g0071 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0071 - - gmx:100809323 738.799